Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03352 ATGTATAGACCATTTGTGACATGTGATGATCCAAAAGGAGTTGTTGAATGTGGGACTCTAAGGAAATATAGGACCAGTTCTCAGAAAATGAAGGACAAGACAAAGAGCCGGAGGACGGCTGAAAACTTAGACACATCCTTGACAAACAAACAAGACAAAGAAGAGAGGGTCTCAAAAGGATCCACAGAGAGATCTTTTGATCCATCATCCTTGCAGCTTGTAGAGGTATCCAGAGGTGCTCAAAGGTTGAACAACATGATTGAATCATGGTCTAGGGGTCTCAAGTATGATGGAAGGTCTGAAGATATTGCAAAAGATTTGTTAAAAGGGGCTCTTGACCTGCAAGAATCTCTAGTAATGCTTCGCAAGGTGCAAGAAGCTTCACAATATATGGCTAGTTTGAAGAGAAAACAAAATGAGAAACCTGAAAGAAGTAGAAGTGATGCAAAGGTGATTGATAGAACAACATTTTCTAATCAATTTGGTGAACAAAGTTATCCCATGGGATTTCAAAGACCTTGGTCTTCAGCTGATGGTTCTTCAAGTAGTTGCAATGAGGAGCTTAAGAAAGTGATTCAGGAGAGTCTGGTTAGACGAAATCTATTGTCAAGCACAACCACTGAAGGAATGGATTCAGCATCAGCATTTCATTCAACTAACTCAAGCCAATCTTCTGGGGTTTGGAATGACAGGCTTTCTGATTCTTCTTTGTCACCATCAATTTCAAGGAAGGAAAGAGGAACCAATTTGGTTGCCAAGCTGATGGGTTTAGAAGAAGTCCCTTCAAGATCATTTCCAGCTGTTATGCAGAAACAGTTGGAGAGTCCAAAGATTCTGAATCAGAAGAGACCTATGTTTGAGATAGATACACCAAAGGTAAGGAAGAATAGTTTACCAGTTGAGAAGGTTAATCCTGAAAGACAGAAGACCCTGAGGGAAATTCTTGACACCACTAATTTCAATGGACTTTTGAAGAAGAGTCCTGTAAGAGAGCCCAAGCTTCAGGTTTATCATTCCAATCACCATTACAAACAGTTTGATGATTTACCTCCCATTGTTCTTATGAAACCTCGATATACTCCATATCAAGGATTTGTAAAAACTTATGAGCCAGTTCCTCAAGAAGAGTTATCCCTTAGAAATCTAAAAGCAAAAACAGTCCCTTCCAAAACGTTCAAACAAAGAGAAGGTTCAACCACCAACATGGGAAGAGAAATGGATGAACATGTATCCAAAAGGCTTACCAAAGAGGAGAGAACTAAGCGCCTCAAAGATGTTTTGGAACTGGATGTGAAAGAAATCAAGCCTGTTGAAAATGAGAAGGCTCCAAGAGGTAAGGTAAAACTGTATAGTCATGCTAGTCACAAATCACAAGTGAGTGAAACAGTTGATAAAAAGGCTAAAAGTGAAACAGTTGATAAGAAAGCTAAGGTAAAAACCATTACTATTAGCAGAAAGCAACCTGAAAAGGAGGTCTCAAAACCAAAAGTGGTGATGAAATCTCAAGATCAAGGAGAAATCAGCCCTGCAAGTACAAAGTTGAGGAAGCCACAAAGTGGGTCCAGAAGTGACAAGAATGAAATTTCCTGCAGAAAGAGCACTGCTTCAAATTCAAATCCCATCTCAAAACCAAAGATTCAAAAAATTAATAGTTCCAAGGAGCAGAAAAAGAATCTGATGAAGAAGCAAAAGTCTGTTGCTGAGCCTGAAGCAGCTAAACCAGTTTTTTCTTCTGCACAGGATGAACCATTGGGACAAGAAGAAGGAAAGAGTATTGATGTTTCCTGTGAAGATGATGATTGCACTGAGATTAGAATAATCACTACAATAACAGATGATCTCACCAAGGAGCATGAGGTAGATGCCTATGCAAATAAGATTAGAGAAAATTGTGAGCAGAGCCAGAGTTCTTCAAGTGATGATATTTTGATGCTAAAGAGTGAACATGAAAATGATGCTATCCCTGCTGAGGTAGCTATTGACACCACCAGTATCAGTGAAATTGATCTTATGCCTGACAAGGACTATTCTGAGCTGAAATATTTGCTTCTAACCAGTCAATCATTCATTAGCCATGCAGAGGAGCTCCTCAATCTTGATGTTGATTGTCCTAAGATCCTACCAAAAAATGAAACAAATGGAATAGCCAATGCCAGACTCTATTTGGATTGTGCAAATGAACTCACTGAGCTCAAAAGCCTTCAGCAGTCACAAGTACTTCACCCCTTATTGCTAACCTGTGCAGGGAATTCAAGATTTCACATCTCTTTAGGCAGGTTGGTTGAGGAAGTCTATAATGCCATTGAGAATCTGACATCTTACAGTGAAAATTCTGGGAAGAAACTTCCTTTGGATAGTATCTTTGCAATGTTGGAGAGAGATATGAAGTGCAACAATGGACTGATAAATGGAATATGGAACTGGGGTTGGAGGCATGGATTTTCTGCAGATGAAGCTGAGCAAGTTGTGAATGAAGTAGAAAACTTAGTTTTAGGTGGATTAATTGATGAGGTAATTATAAATTAA 2526 0.3911 MYRPFVTCDDPKGVVECGTLRKYRTSSQKMKDKTKSRRTAENLDTSLTNKQDKEERVSKGSTERSFDPSSLQLVEVSRGAQRLNNMIESWSRGLKYDGRSEDIAKDLLKGALDLQESLVMLRKVQEASQYMASLKRKQNEKPERSRSDAKVIDRTTFSNQFGEQSYPMGFQRPWSSADGSSSSCNEELKKVIQESLVRRNLLSSTTTEGMDSASAFHSTNSSQSSGVWNDRLSDSSLSPSISRKERGTNLVAKLMGLEEVPSRSFPAVMQKQLESPKILNQKRPMFEIDTPKVRKNSLPVEKVNPERQKTLREILDTTNFNGLLKKSPVREPKLQVYHSNHHYKQFDDLPPIVLMKPRYTPYQGFVKTYEPVPQEELSLRNLKAKTVPSKTFKQREGSTTNMGREMDEHVSKRLTKEERTKRLKDVLELDVKEIKPVENEKAPRGKVKLYSHASHKSQVSETVDKKAKSETVDKKAKVKTITISRKQPEKEVSKPKVVMKSQDQGEISPASTKLRKPQSGSRSDKNEISCRKSTASNSNPISKPKIQKINSSKEQKKNLMKKQKSVAEPEAAKPVFSSAQDEPLGQEEGKSIDVSCEDDDCTEIRIITTITDDLTKEHEVDAYANKIRENCEQSQSSSSDDILMLKSEHENDAIPAEVAIDTTSISEIDLMPDKDYSELKYLLLTSQSFISHAEELLNLDVDCPKILPKNETNGIANARLYLDCANELTELKSLQQSQVLHPLLLTCAGNSRFHISLGRLVEEVYNAIENLTSYSENSGKKLPLDSIFAMLERDMKCNNGLINGIWNWGWRHGFSADEAEQVVNEVENLVLGGLIDEVIIN. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03352 841 MobiDBLite consensus disorder prediction 25 40 - -
Seca10g03352 841 PANTHER OS01G0228800 PROTEIN-RELATED 1 839 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 47 62 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 388 412 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 458 497 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 25 70 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 549 568 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 207 242 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 441 591 - -
Seca10g03352 841 MobiDBLite consensus disorder prediction 530 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03352 Seca-Chr10 50878448 50882705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03352 1 207 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 39.234 4.73e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03352 - - gmx:100797863 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03352 10 50878448 50882705 Seca10g03352 10 50878448 50882705 ECH
Seca12g06770 12 159706206 159710453 Seca10g03352 10 50878448 50882705 PCT