Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03342 ATGCATTCTGAGGCAAGGATACTTATGGAGCCTGGATTTGATGATACTACAGAGGAGAACCCACCACCATATGAGCTTGATGCTTTGAATCGTGAAAGTTCACTTCAGCATCCTGATCCTGATGCTATTCCCTTGTCTTCAGAGAACTTGAACCAAACTGGATTTGGAAATCAAGAGGAGGGAACGGTGAGTCATGAGGAATATTTTAGAGTTTTAGATGAGATGAAAACTAAGAGCTACTCATATGACACTGATAAGGATACAAACATCCATGATGGTAATACCTCATGCCTTGCAACATGCACAACAAGTGACATAGATGATGATCTTTGGAAGGGTTCTTTCACATATGAAGCTGAGGATGAGGAGGGAAGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTAGATGGTATAGAGCTCCTGAACTACTTTATGGATCTACAAACTATGGTTTAGAGGTTGATCTCTGGTCCTTAGGATGTGTCTTTGTTGAGCTCTTAACACTGAAGCCTTTGTTTACTGGAACAGCTGATATAGATCAACTCAGTAGAATTATCAGTGTTTTAGGTAACCTCAATGAGGAAGCTTGGTCTAGTTGTTCCAAACTTCCTGATTATGCAACAATCTCATTCAGTAAGGTGGAAAATCCTATTGGTCTTGAAGCCTGCATGCCCAACCACTCCCTTGATGAAGTTTCCTTTGTAAAAAGATTGGTTTGTTATGATCCAGCTAGGAGAGCCACAGCAATGGAGTTACTTCATGACAAGTACTTCAGTGAAGAACCCCTTCCTGTTCCTGTTTATGAGCTGAGGGTTCCTTTGACTAGAAATGGACAAGACCAGGATTCCCCTGGTGGGTTTCATGGTTTCAATGAAAGGGGTTCTGATTCTGATTGA 903 0.4142 MHSEARILMEPGFDDTTEENPPPYELDALNRESSLQHPDPDAIPLSSENLNQTGFGNQEEGTVSHEEYFRVLDEMKTKSYSYDTDKDTNIHDGNTSCLATCTTSDIDDDLWKGSFTYEAEDEEGRNELGCLTSCVGTRWYRAPELLYGSTNYGLEVDLWSLGCVFVELLTLKPLFTGTADIDQLSRIISVLGNLNEEAWSSCSKLPDYATISFSKVENPIGLEACMPNHSLDEVSFVKRLVCYDPARRATAMELLHDKYFSEEPLPVPVYELRVPLTRNGQDQDSPGGFHGFNERGSDSD. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03342 300 MobiDBLite consensus disorder prediction 45 60 - -
Seca10g03342 300 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03342 300 MobiDBLite consensus disorder prediction 277 300 - -
Seca10g03342 300 SUPERFAMILY Protein kinase-like (PK-like) 127 266 IPR011009 -
Seca10g03342 300 PANTHER CELL DIVISION PROTEIN KINASE 100 266 - -
Seca10g03342 300 Gene3D Transferase(Phosphotransferase) domain 1 98 266 - -
Seca10g03342 300 SMART serkin_6 24 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03342 300 MobiDBLite consensus disorder prediction 1 62 - -
Seca10g03342 300 Pfam Protein kinase domain 131 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03342 Seca-Chr10 50622217 50624354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03342 4 300 Core Cell Cycle Gene Families AT4G28980 57.718 1.51e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Seca10g03342 Pkinase 2.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03342 - - gmx:548056 464.151