Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g03342 | ATGCATTCTGAGGCAAGGATACTTATGGAGCCTGGATTTGATGATACTACAGAGGAGAACCCACCACCATATGAGCTTGATGCTTTGAATCGTGAAAGTTCACTTCAGCATCCTGATCCTGATGCTATTCCCTTGTCTTCAGAGAACTTGAACCAAACTGGATTTGGAAATCAAGAGGAGGGAACGGTGAGTCATGAGGAATATTTTAGAGTTTTAGATGAGATGAAAACTAAGAGCTACTCATATGACACTGATAAGGATACAAACATCCATGATGGTAATACCTCATGCCTTGCAACATGCACAACAAGTGACATAGATGATGATCTTTGGAAGGGTTCTTTCACATATGAAGCTGAGGATGAGGAGGGAAGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTAGATGGTATAGAGCTCCTGAACTACTTTATGGATCTACAAACTATGGTTTAGAGGTTGATCTCTGGTCCTTAGGATGTGTCTTTGTTGAGCTCTTAACACTGAAGCCTTTGTTTACTGGAACAGCTGATATAGATCAACTCAGTAGAATTATCAGTGTTTTAGGTAACCTCAATGAGGAAGCTTGGTCTAGTTGTTCCAAACTTCCTGATTATGCAACAATCTCATTCAGTAAGGTGGAAAATCCTATTGGTCTTGAAGCCTGCATGCCCAACCACTCCCTTGATGAAGTTTCCTTTGTAAAAAGATTGGTTTGTTATGATCCAGCTAGGAGAGCCACAGCAATGGAGTTACTTCATGACAAGTACTTCAGTGAAGAACCCCTTCCTGTTCCTGTTTATGAGCTGAGGGTTCCTTTGACTAGAAATGGACAAGACCAGGATTCCCCTGGTGGGTTTCATGGTTTCAATGAAAGGGGTTCTGATTCTGATTGA | 903 | 0.4142 | MHSEARILMEPGFDDTTEENPPPYELDALNRESSLQHPDPDAIPLSSENLNQTGFGNQEEGTVSHEEYFRVLDEMKTKSYSYDTDKDTNIHDGNTSCLATCTTSDIDDDLWKGSFTYEAEDEEGRNELGCLTSCVGTRWYRAPELLYGSTNYGLEVDLWSLGCVFVELLTLKPLFTGTADIDQLSRIISVLGNLNEEAWSSCSKLPDYATISFSKVENPIGLEACMPNHSLDEVSFVKRLVCYDPARRATAMELLHDKYFSEEPLPVPVYELRVPLTRNGQDQDSPGGFHGFNERGSDSD. | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g03342 | 300 | MobiDBLite | consensus disorder prediction | 45 | 60 | - | - | |
Seca10g03342 | 300 | ProSiteProfiles | Protein kinase domain profile. | 1 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g03342 | 300 | MobiDBLite | consensus disorder prediction | 277 | 300 | - | - | |
Seca10g03342 | 300 | SUPERFAMILY | Protein kinase-like (PK-like) | 127 | 266 | IPR011009 | - | |
Seca10g03342 | 300 | PANTHER | CELL DIVISION PROTEIN KINASE | 100 | 266 | - | - | |
Seca10g03342 | 300 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 266 | - | - | |
Seca10g03342 | 300 | SMART | serkin_6 | 24 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g03342 | 300 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Seca10g03342 | 300 | Pfam | Protein kinase domain | 131 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g03342 | Seca-Chr10 | 50622217 | 50624354 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g03342 | 4 | 300 | Core Cell Cycle Gene Families | AT4G28980 | 57.718 | 1.51e-113 | 335 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CCRK | Seca10g03342 | Pkinase | 2.9e-22 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g03342 | - | - | gmx:548056 | 464.151 |