Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03328 ATGAATAGAGGTGTTCTTCAGAGCTCACCGGTGCAACAAATGATGGCCGGGAACCCTAACTGGTGGAACATCAATATCAATAACATGAGGCCCCCAACTCCACAAGTTCCTTCTTTCTTGTCAACTCCTTCAAACTTTCTTACCCCATATGCCCCCACTTCTTCTTCTTCTCTTCCTTTTCCTTCTTGGCATGAAAATCAAGAGCTTCCTGAGTCATGGAGCCAGCTACTCATGTATCTCTCTCTCTCTCTATCTCAGAGTGGACTTGTGGCTGAAGAAGATAAAGCTGGAATGAGTGAGTTTCAGAATCAAATGGTGAATCAGGTTCCAAATGCTTCTCTTGTTGATGTTAAGCAAGAAAGCTCAGTAAACAGCTATGTGTATGGACATGGAAATGAAGAACTTCACTCAGCAAAGTCTTCTTGGTCTCCTCCAAAATCATGTGTCACAAGTTTCAGCAGCAACATGTTGGATTTCTCTAACAATAACACAGATGTGAGGCATCCACCACCAGATCGATCTTCTGAGGTAAGAAGGAAGAGCTCCAAGTGTAACAGCACTGCATCTGGTGGGGCACTCAAGAAAGCTAGGGTTCAACCCTCTACAACTCAGTCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAACTCGTTTCCCCATTTGGGAAGACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGCAGTGGATCAGGAAACACGAGGCACCAACATTCACATCATGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGTTAAATGAAAACTGCTTGAAGAGGAAAGCAGCTGAGGAGCTGGATTCTCAAGAAGAACCAAAGAAGGACCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTTTCATGCACACTGCAAGTTGGGAGTGAGAATGGAGCTGACTATTGGGCTCCTGCCCTTGGAGGAGGGGGCTTTCGGTAG 1041 0.4544 MNRGVLQSSPVQQMMAGNPNWWNININNMRPPTPQVPSFLSTPSNFLTPYAPTSSSSLPFPSWHENQELPESWSQLLMYLSLSLSQSGLVAEEDKAGMSEFQNQMVNQVPNASLVDVKQESSVNSYVYGHGNEELHSAKSSWSPPKSCVTSFSSNMLDFSNNNTDVRHPPPDRSSEVRRKSSKCNSTASGGALKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSSGSGNTRHQHSHHGEKNCIFPEDPGQLLNENCLKRKAAEELDSQEEPKKDLRSRGLCLVPVSCTLQVGSENGADYWAPALGGGGFR. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03328 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 259 IPR036638 GO:0046983
Seca10g03328 346 MobiDBLite consensus disorder prediction 160 206 - -
Seca10g03328 346 Gene3D - 204 258 IPR036638 GO:0046983
Seca10g03328 346 FunFam transcription factor bHLH68 isoform X1 205 258 - -
Seca10g03328 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Seca10g03328 346 CDD bHLH_AtbHLH_like 206 255 IPR045239 -
Seca10g03328 346 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03328 Seca-Chr10 50264310 50268416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03328 1 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.207 1.32e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03328 - - gmx:100786555 511.916