Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03298 ATGGAGTTTAATACGATAGAAGAATCTAGGAGATTTTGGACAGATTATGGTGGAATGATTGGTTTTGATGTTAGGCAATTGTATGCAAATAAAAGTCATGTAGATAAGCGTGTTAATACGGCAAGGTTTGTATGTTCAAAGGAATGCTTTAGAAGACTTGACAAGCGAGATTTTCTGACAAAATATCCCCGAGCAGAAACAAGAACAGGTTGTGGAGTAAGAATGGGTATAAAGTTAGTTCGAGAAACTGGAAAGTTTGTAATTTATGAAATCAATCATATTCTGCAGACTCCAGAAACTAGTCACATGATGCCATCGCAAAGAAAGATCTCAATAGTACAAGGGATGCAAATAGATTTAGCTGATGATTCTGGTATAAGACCAAAAGCAACCCTTGACTTAATGAGTAAACAAGCAGGTGGTAAAGATGTCATTGGATTTACAAAGCAAAACCAAAAGAACTATCTTCGTAATAAGAGAAAGAGAGAGTTGGCATATGGGGAAGCCAGCAGCTTACTAAGGTACTTTCGTGACCAATTATCTAATAATCCATCATTTCATTATGTTGTGTAG 573 0.3613 MEFNTIEESRRFWTDYGGMIGFDVRQLYANKSHVDKRVNTARFVCSKECFRRLDKRDFLTKYPRAETRTGCGVRMGIKLVRETGKFVIYEINHILQTPETSHMMPSQRKISIVQGMQIDLADDSGIRPKATLDLMSKQAGGKDVIGFTKQNQKNYLRNKRKRELAYGEASSLLRYFRDQLSNNPSFHYVV. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03298 190 PANTHER OS01G0519700 PROTEIN 1 186 - -
Seca10g03298 190 Pfam FAR1 DNA-binding domain 11 92 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03298 Seca-Chr10 49316313 49316885 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g03298 FAR1 2.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03298 - - aip:107620925 252.292