Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03296 ATGGTGGACCCAAACTCAAAGGGTCCACCCTATAATTACCCGGTTGGTGCCGCAAGGAGGAACCGCAAGAAGAATGAATTCCTCCTGATATACGAATACATACAAACTGGAAGTTTAGATTCTCATCTTTTTGGTGGAGAAAGTGTCTTGTCATGGCAGGTGAGGTACAAGATAGCTATGGGCTTGGCCTCAGCATTACATTATTTGCAGGAAGAGTGGGGAAAATGTGTGCTTCATAGGGACATCAAATCAAGTAACATAATGTTGGATGGAACAGACTCAGTAAAATGA 291 0.4296 MVDPNSKGPPYNYPVGAARRNRKKNEFLLIYEYIQTGSLDSHLFGGESVLSWQVRYKIAMGLASALHYLQEEWGKCVLHRDIKSSNIMLDGTDSVK. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03296 96 Gene3D Transferase(Phosphotransferase) domain 1 13 96 - -
Seca10g03296 96 PANTHER - 23 91 - -
Seca10g03296 96 SUPERFAMILY Protein kinase-like (PK-like) 24 96 IPR011009 -
Seca10g03296 96 Pfam Protein kinase domain 22 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03296 96 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Seca10g03296 96 ProSiteProfiles Protein kinase domain profile. 1 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03296 Seca-Chr10 49269795 49270085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03296 23 96 Receptor kinase-like Gene Family AT5G65600 68.000 1.55e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca10g03296 Pkinase 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03296 - - mof:131166189 111.309