Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03285 ATGGAGCGCATCATCGGGGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGATCCTTTGGTGAAATCTATCTTGCTACACATAATGATACATTTGAGATCGTTGCCGTCAAGATTGAGAACGGTAAAACGAAGCATCCACAATTGCTTTACGAGGCTAAGCTCTACAATATTCTCCAAGGAGGAAGTGGCATCCCGGGCATAAGGTGGCGTGGTGTAGACCGGGAGGATAATGTTCTGGTTATGGATTTGCTGGGGCCTAGCCTTGAGGATCTTTTTGTCTACTGTGGAAGAAAGTTCTCCCTTAAAACTGTTTTGATGCTGGCTGATCAAATGATGACCAGAATAGAATATGTGCATTCTAAAGGATTCCTCCATAGGGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCAGGTTTACATAATTGATTTTGGACTTGCAAAACGATATCGGGAATCTGGAACCAATCGCCATATTCCTTACAGGGAGAACAAAAACTTAACAGGAACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTAGGTTATGTGCTTCTGTATTTCCTTAGAGGAAGCCTTCCTTGGCAAAATCTAAAGGCTGCGACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTTTCAACTCCTATTGAGGTATTATGCAAATCTCATCCTCCAGAGTTTGCGTCATACTTCCATTACTGCCACTCTCTGACCTTTGACCAGCGACCTGATTATGGATTCTTGAAACGCCTATTTCGGGAGTTGTTTGCTCGGGAAGGTTATGAATTTGATTATGTGTTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAATAGTAGAGTCCAGCCTCAGATATCTCCGGTTCCTGGAGCAAGCAACAGTCATGCAATGCCCATGGATGTTGACAACCATCAAGGCGATGTCTCAGCAGAGCGCATTAAATCAGGCAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTTAAATCACCAGTGGGTAAAAAATTGGATTCTCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATCCCCTCTACTTCATACTCTCTTGCTGGTACCTCAAAAAGGAACTCCTTAAAGCCTGCGTCCAATGAAGCTGCAAACCCTGGACACGGGCAAGGAAGTAGTAAAATTGGCCCCTCAAGTAGCTGGATTTCATCTCTGCAGCGCATATCTTCGGCCAAATGA 1272 0.4355 MERIIGGKYKLGRKIGSGSFGEIYLATHNDTFEIVAVKIENGKTKHPQLLYEAKLYNILQGGSGIPGIRWRGVDREDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESGTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPPEFASYFHYCHSLTFDQRPDYGFLKRLFRELFAREGYEFDYVFDWTILKYQQAQNSRVQPQISPVPGASNSHAMPMDVDNHQGDVSAERIKSGNATGSGVKVQFKSPVGKKLDSPLDKNIFGEANIPSTSYSLAGTSKRNSLKPASNEAANPGHGQGSSKIGPSSSWISSLQRISSAK. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03285 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca10g03285 423 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03285 423 MobiDBLite consensus disorder prediction 377 423 - -
Seca10g03285 423 PANTHER CASEIN KINASE-RELATED 8 334 - -
Seca10g03285 423 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03285 423 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Seca10g03285 423 FunFam Casein kinase I isoform delta-like 1 340 - -
Seca10g03285 423 MobiDBLite consensus disorder prediction 303 325 - -
Seca10g03285 423 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca10g03285 423 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Seca10g03285 423 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03285 Seca-Chr10 48932512 48938337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03285 8 246 MAP Kinase Kinase Kinase AT1G54960 27.953 8.80e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca10g03285 Pkinase 7.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03285 K08960 - gmx:100805890 770.385