Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g03282 | ATGCTTCATGTTGTTTATCGTGTTGGGGACTTAGACAAGACCATAAAATTTTATACAGAGTGCCTGGGAATGAAGGTGCTCAGAAAGCGTGACATGCCAGAGGAGAGATATACCAATGCCTTTCTTGGATATGGACCTGAGGATGCACACTTTGTTATTGAACTGACATACAATTATGGGATTGACAAGTATGACATTGGAACTGGATTTGGCCATTTTGGTATTGCTATTGATGATATTTCAAGAATAGTGGAAATTGTAAGAGCTAAGGGTGGAAAAATAATTAGAGAGCCTGCTCCTGTCAAGGGAGGCAGCTCAACAATTGCAGTTATTGAAGATCCTGATGGTTATGAATTTGAACTTTTGGAAAGGGCTCCCTCTCCTGAGCCTTTGTGTCAAGTAATGCTTCGGGTGGGTGATCTTGATCGTTCCATAAAATTTTATGAGAAGGCTCTTGGTATGCAGCTACTTCGTACACGAGATAATCCAGAATCCAAGGTACCTTGGCATCCTTGTTGTTATATATTTTGGCATGCAATGCTGGGTTATGGTCCAGAAGAAAAAAGTACTGTTCTGGAGTTGACTTACAACTATGGAGTCACAGAATATGATAAAGGAGATGCATATGCTCAGATTGCAATAGGCACAGATGATGTGTACAAAACTGCAGAAGCAATTAAACTTGCTGGAGGAAAGATTACTCGGGAACCAGGACCAGTACCTGGTATCAAAACAAAAATAACATCATGCGTGGATCCTGATGGTTGGAAAACGGTTTTTGTAGATAATGTTGATTTTCTTAGGGAGTTGGAGTAG | 816 | 0.4044 | MLHVVYRVGDLDKTIKFYTECLGMKVLRKRDMPEERYTNAFLGYGPEDAHFVIELTYNYGIDKYDIGTGFGHFGIAIDDISRIVEIVRAKGGKIIREPAPVKGGSSTIAVIEDPDGYEFELLERAPSPEPLCQVMLRVGDLDRSIKFYEKALGMQLLRTRDNPESKVPWHPCCYIFWHAMLGYGPEEKSTVLELTYNYGVTEYDKGDAYAQIAIGTDDVYKTAEAIKLAGGKITREPGPVPGIKTKITSCVDPDGWKTVFVDNVDFLRELE. | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g03282 | 271 | Gene3D | - | 127 | 271 | IPR029068 | - | |
| Seca10g03282 | 271 | Gene3D | - | 1 | 126 | IPR029068 | - | |
| Seca10g03282 | 271 | ProSitePatterns | Glyoxalase I signature 1. | 133 | 154 | IPR018146 | GO:0004462|GO:0046872 | |
| Seca10g03282 | 271 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 2 | 126 | IPR029068 | - | |
| Seca10g03282 | 271 | ProSitePatterns | Glyoxalase I signature 1. | 3 | 24 | IPR018146 | GO:0004462|GO:0046872 | |
| Seca10g03282 | 271 | FunFam | Lactoylglutathione lyase | 127 | 271 | - | - | |
| Seca10g03282 | 271 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 131 | 263 | IPR029068 | - | |
| Seca10g03282 | 271 | ProSitePatterns | Glyoxalase I signature 2. | 67 | 79 | IPR018146 | GO:0004462|GO:0046872 | |
| Seca10g03282 | 271 | PANTHER | LACTOYLGLUTATHIONE LYASE | 1 | 271 | - | - | |
| Seca10g03282 | 271 | NCBIfam | lactoylglutathione lyase | 1 | 125 | IPR004361 | GO:0004462|GO:0046872 | |
| Seca10g03282 | 271 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 133 | 257 | IPR004360 | - | |
| Seca10g03282 | 271 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 2 | 121 | IPR004360 | - | |
| Seca10g03282 | 271 | CDD | GlxI_Ni | 1 | 122 | - | - | |
| Seca10g03282 | 271 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 1 | 124 | IPR037523 | - | |
| Seca10g03282 | 271 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 130 | 263 | IPR037523 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca10g03282 | Seca-Chr10 | 48878856 | 48882578 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca10g03282 | 131 | 260 | Calmodulin-binding Proteins | AT1G08110 | 27.211 | 1.19e-07 | 49.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g03282 | K01759 | - | gmx:100775714 | 473.396 |