Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03280 ATGAATCAACTTGGTATTAGCCTCTTGGTTCTCTCAATCTCATTCTTCTTCCATGTTAGAGCACAGACACAAAGTGCACCTTCACAAGATGCTATCTCTAATTTCCAACCAAGCCTTGCTGTTGTTATAGGAATCCTTGGTCTCATGTTTTCAGTAACATTTGTTCTTCTCATGTTTGCCAAATTCTGTCATCGAAATGGATCAATTTCTTTTGGAGCCCCAGAAAGTCAACCAGCACTTAACAGATCAAGGTCAAGATTTTCAGGAATTGACAAGACTGTCATAGAATCACTCCCTTTCTTCAGATTTTCTTCTCTCAAAGGATCAAAGGAAGGCCTTGAATGTGCAGTGTGTCTATCAAAGTTTGAAGATATAGAAATTCTCAGGCTATTGCCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAACACTCAACTTGTCCTATTTGCAGGCACAAGGTCAACCCTGAAGACCAAACAATTTTCACATATTCAAACAGTTTAAGGCTTCTAGCAAACCAATCAGGGCTTGGTGAAGAATCCAACATAGAGATCTTTGTCCAGAGAGAGGAAGAAAATCATGGTTCATCAAGATTCAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAAGATGTTATTAAGGAAGAAGAATTGCCAATCCAACAAGGAGCAGAAGAAGAAGAAGAAGAAAGTGATGGTAACAAAAAGGCCTATCATAAACACAATCACAGGATTACTATATCTGATGTTGTGTTCAAGCATAGGTGGAGCAACGTGAGCTCTTCAGACCTCATGTTTTTGAATTCAGAGATGCTTAATGCTACTTCAAGTGACAGATTCAACAACTTTGAAGCAAATGTTGACTTGGTGCCAAATACAAGAGGAGGAGTAGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAGAGAAAGCTTTCCTTTGAGAGCAAAGTTAGTGCACTAAACAAGATTAAATCAATTTCAGATAAGGATCCTCCTTTTACATCAGATTCTTCTGGAAATTTTAGTCATGTACCAAAGTATGTGAATCCAGGTGAGAACAGATCAATGTCAGAAATCACAGCTGTCTCTAGATTTGGAGATTTAGGAATGAAGAAAAGGGTCTATGAAAATTCTTCTATGCTTGAAAATAATCTTAAAGAGGAAAGAATGAGACAGCTTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAGCAATCTCAGAACAAACAAGAGCAATTAGATGTGTAA 1299 0.378 MNQLGISLLVLSISFFFHVRAQTQSAPSQDAISNFQPSLAVVIGILGLMFSVTFVLLMFAKFCHRNGSISFGAPESQPALNRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSTCPICRHKVNPEDQTIFTYSNSLRLLANQSGLGEESNIEIFVQREEENHGSSRFSIGSSFRKIGKDVIKEEELPIQQGAEEEEEESDGNKKAYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSDRFNNFEANVDLVPNTRGGVENEQIMNIKEEMERKLSFESKVSALNKIKSISDKDPPFTSDSSGNFSHVPKYVNPGENRSMSEITAVSRFGDLGMKKRVYENSSMLENNLKEERMRQLWFPIARRTAQWFVNRERRSQQSQNKQEQLDV. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03280 432 CDD RING-H2_EL5-like 114 157 - -
Seca10g03280 432 FunFam RING-H2 finger protein ATL43 90 164 - -
Seca10g03280 432 SUPERFAMILY RING/U-box 94 163 - -
Seca10g03280 432 Pfam Ring finger domain 114 157 IPR001841 -
Seca10g03280 432 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Seca10g03280 432 SMART ring_2 115 156 IPR001841 -
Seca10g03280 432 MobiDBLite consensus disorder prediction 222 246 - -
Seca10g03280 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 166 IPR013083 -
Seca10g03280 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03280 Seca-Chr10 48863192 48864490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03280 13 427 C3H Transcription Factor Family AT4G28890 49.111 1.11e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03280 K10664 - gmx:100803207 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03280 10 48863192 48864490 Seca10g03280 10 48863192 48864490 ECH