Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03279 ATGGGTTGCATTTACTCCAGGGTTTGCATAGGTGACACTTGCAGGGGTTCCAGTGTCAATGGGGACCCAATTTTGAGACCAGGTGTGGGTGAAGTCGCTGCTACGTTCTCACCAACATCTTCAGAGGTTCGAGAAGGTGAAATCAGAGACAATTTGAACCAATTGAGCTTAACCAGAGAGTCTGAAGCTGGAATCAGAAGGCTCGCTAGGGTTTCTGCTCAGTTTCTTCCCCCAGATGGTTCCAGAGTTGTGAAGGTTCCTTCAAACAACTATGATTTGCGCTATTCGTTTTTGTCTCAGAGAGGTTACTACCCTGATGCACTTGATAAGGCTAACCAAGACAGCTTCTGCATTCACACTCCCTTTGGAACTAGTCCTAACGATCATTTCTTCGGGGTTTTTGATGGTCATGGTGAATTTGGAGCGCAGTGTTCGCAGTTCGTGAAGCAGAAGCTGTGTGAGAATTTGCTGAGGAACTCCAAGTTTCGTGTGGATGCTGTGGAGGCTTGTCATGCTGCGTTCTTGACCACGAATTCGCAGTTGCATGCTGATATTTTGGATGATAGCATGAGTGGAACTACGGCCATCACAGTGCTGGTTCGGGGAAGAACTATGTATGTGGCGAATTGTGGTGATTCGAGGGCGGTGATAGCAGAGAAGAGAGGGAAGGATGTTGTGGCGGTTGATTTGTCAATTGATCAGACACCTTTTAGGACTGATGAGCTTGAAAGGGTGAAGCTTTGTGGAGCAAGGGTTCTTACCTTGGATCAGATTGAAGGGTTGAAGAACCCTGATGTTCAGTGTTGGGGTACTGAAGAAGGTGATGATGGTGACCCTCCTAGGTTGTGGGTGCCCAATGGGATGTACCCTGGTACTGCTTTTACCAGGAGTTTAGGTGATTCTGTTGCTGAGAGTATTGGGGTTGTTGCTAACCCTGAGATTGTTGTGTTCGAGCTCACAGAGGATAATCCCTTTTTTGTGCTTGCCAGTGATGGGGTGTTTGAGTTTCTTTCTAGCCAGACTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTCTGGCTACAGTATGAAACTCGTACAGATGATATTACAGTCATAATTGTGCATATAAATGGGCTAACTGAACCTGCTGTTGGTCAGTCAGCAAGTTATGGTGATGTTTTACGAGCCCCCGTACCTCAAGTTGTAGAGGTGACCGGTTCAGAATCTCCTTCCACCTTTGGCTGGAATGCTAGGAACCATCGTGTAAGGCATGACTTGTCAAGGGCACGCCTCCGAGCAATTGAAAATTCCCTAGAGAATGGACAAGCTTGGGTCCCTCCATCTTCAGCCCACAGGAAGACATGGGAGGAAGAAGCACACATCGAGCAGGCGTTGCATGATCATTTTCTCTTCCGAAAACTTACTGATTCACAATGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAAGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTCTATGTTGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACTCAGGAGGAAAAGGATGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTATCATGTTTTGGAGAACTTGCTTTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTATCATCCTTGAAGTTGCTTCGGTCTGTAGACCTCCTCTCAAGGCTGTCAATTTTGCAATTGAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCGTTCTCAAGTGGGCAGACAATAATTGAAAAAAATGAAGTCCATGCATTGTATATTATCCAGAAGGGACGAGTGAAAATCGCTTTTGATGCTGATTTATTGACAAGTGCAAATGCCTCCAGCCTCAGGCCTGACATCCAAAATGATGATGATGATGTACAGAGCAGAAGAGAACTGTCAATAGAGAAGCCGGAGGGAAGCTATTTTGGTGAATGGGCCCTTCTTGGCGAAAATATTGGTTCCTTAACTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACCAAGGACAAATTTGAATCAGTTATTGGCTCCTTGCAAAAGATTTCTCAGGAAGATCACAAGTATGTTTTAATATGTGCATGTATCAGACAACAGCTTTGTGGTTTCTGCTTATTTGCTTATATGCTGCACTTAAAGCTTCATATCATTGGCACCATTAATTTGACCATAGGTTAA 2331 0.4444 MGCIYSRVCIGDTCRGSSVNGDPILRPGVGEVAATFSPTSSEVREGEIRDNLNQLSLTRESEAGIRRLARVSAQFLPPDGSRVVKVPSNNYDLRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRNSKFRVDAVEACHAAFLTTNSQLHADILDDSMSGTTAITVLVRGRTMYVANCGDSRAVIAEKRGKDVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSLGDSVAESIGVVANPEIVVFELTEDNPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLTEPAVGQSASYGDVLRAPVPQVVEVTGSESPSTFGWNARNHRVRHDLSRARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSSGQTIIEKNEVHALYIIQKGRVKIAFDADLLTSANASSLRPDIQNDDDDVQSRRELSIEKPEGSYFGEWALLGENIGSLTAVAVGDVVCALLTKDKFESVIGSLQKISQEDHKYVLICACIRQQLCGFCLFAYMLHLKLHIIGTINLTIG. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03279 776 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Seca10g03279 776 SUPERFAMILY cAMP-binding domain-like 443 588 IPR018490 -
Seca10g03279 776 ProSiteProfiles cAMP/cGMP binding motif profile. 478 587 IPR000595 -
Seca10g03279 776 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Seca10g03279 776 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 461 734 - -
Seca10g03279 776 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Seca10g03279 776 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Seca10g03279 776 SMART PP2C_4 86 382 IPR001932 -
Seca10g03279 776 CDD PP2Cc 110 384 IPR001932 -
Seca10g03279 776 PRINTS cAMP-dependent protein kinase signature 514 528 - -
Seca10g03279 776 PRINTS cAMP-dependent protein kinase signature 549 558 - -
Seca10g03279 776 PRINTS cAMP-dependent protein kinase signature 723 735 - -
Seca10g03279 776 PRINTS cAMP-dependent protein kinase signature 499 513 - -
Seca10g03279 776 SUPERFAMILY cAMP-binding domain-like 596 730 IPR018490 -
Seca10g03279 776 Pfam Cyclic nucleotide-binding domain 623 727 IPR000595 -
Seca10g03279 776 Pfam Cyclic nucleotide-binding domain 497 588 IPR000595 -
Seca10g03279 776 Gene3D Jelly Rolls 592 742 IPR014710 -
Seca10g03279 776 CDD CAP_ED 604 728 IPR000595 -
Seca10g03279 776 Gene3D Jelly Rolls 444 586 IPR014710 -
Seca10g03279 776 Gene3D - 83 385 IPR036457 -
Seca10g03279 776 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 452 592 - -
Seca10g03279 776 CDD CAP_ED 478 587 IPR000595 -
Seca10g03279 776 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Seca10g03279 776 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 594 741 - -
Seca10g03279 776 ProSiteProfiles cAMP/cGMP binding motif profile. 604 728 IPR000595 -
Seca10g03279 776 SMART cnmp_10 478 601 IPR000595 -
Seca10g03279 776 SMART cnmp_10 604 742 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03279 Seca-Chr10 48848586 48857722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03279 1 739 PP2C-type Phosphatase Gene Family AT2G20050 74.005 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03279 - - gmx:100799821 1335.09