Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03276 ATGGTACCCAAAACAGGGGAATTAAGTCTTGAAGTTTCAACAAACGACCCCGTGAGCAACATCGTTGTTGCCCAAAATCCTGAAAGGGTTGAAACAACGGTGCAGAGAAGAACCAGCTTAAGGCTTCAAAACCGGCCTAAGGCTCACTATGGCAGTGATACTAATACAAAGAGGCCAATGAATGACGCTAATGGGGACCATTCCGATGAGAAGAGAACAAAATTCAAACCTTCCATGCAACAAGAGGCATTGGCAAAAGGCGAGAATTGTCTCAGAGACACATGGTCTCGGACATGGGGCTGTGGAGGGACATGTGTGGTTAGCAGGGGTAGGGGTCATTCCAGTTCAACACTTGTTTTTGATGAACTGGACTTCAGGGGTGTTTTGGCAGTGAAAGAATCATTGAGGCTGGCCAATCTCTCGAAACTTCAATCTTCTGAGGATGAACAGAATAGTAGCAAGCAGATAGCTAAAGATTATCGAGAAGTATCCAAACTTTTAAATGCTAATAAGGTCGATAAAAATTGGGTTGTTGAGAAACACATTCCTGGGTTTACAGTATGCGAGTATCTTGTAAAGAAGCTGAAAAGTTTGGCGATGTCGAGTGTAGAGAAGGTCTGCTTTTGTGAAGGGAGTATATCTGCAGCTCCGTATATTTCTCCAAGTTTGGTTGTCAAAGACATAAGCAATGGCCAGGAAGCTATATGTATTCCTGCTACCAATGAGTATGACAATCCTCCAGTTGCACCTCCTGGTTTTACGTATATCACCTCTGTCAAAGTTGCAAGCAACGTGAAAGTCCCACATAGACCCAATGGATGCAAATGCCAAGGAACTTGTAGAAATACAAGGAATTGCTCTTGTGCCAAACATAATGGCTCCGAGTTTCCCTATGTTCGTGGTGGTGACAGACTGAAGGAAGCTAGGGATGTCTTGTTTGAATGTGGACCAAAATGTGGATGTGGACCTGATTGTGGTAACAGAATTTCTCAAAAGGGTTTGAAGTACAGGCTTGAGGTTTACCGTACTGCCAACAAAGGGTGGGCTGTTAGAACATGGGACTTTATTCCTTCTGGTGCACCAGTTTTGGAATATACTGGTGTACTTCGCAGAACTGATGAGTTAGATAAATTAACCGAGAATGAATATATATTTGAAATTGATTGTTTGCAAACAATGAATGAAGTAGAGGGACGGGAGTATTTTTTTCAGAGGCGGTTGCGTAGTGTATCACTGCCTACAAAAACTTCAGCTGATGAGCCAATGAAAAACAGTCCTGAGTTCGGCATAGATGCTGAATCTTTTGGTAATGTTAGTAGGTTCATCAACCACAGTTGTGAGCCAAACCTCTTTGTGCAGTGTGTTCTGAGCTCCCACCATGATATCAGTTTAGCTCGGGTGGTGTTATTTGCTGCAGATGACATACCTCCTTACCAAGAACTGACATATGACTATGGATACATACTTGATAGTGTTGTTGGTCCGGATGGAAAAATCAAGAAGTTACCATGTCACTGTGGTACAGATGACTGCCGTAAACGCTTATACTAG 1551 0.4288 MVPKTGELSLEVSTNDPVSNIVVAQNPERVETTVQRRTSLRLQNRPKAHYGSDTNTKRPMNDANGDHSDEKRTKFKPSMQQEALAKGENCLRDTWSRTWGCGGTCVVSRGRGHSSSTLVFDELDFRGVLAVKESLRLANLSKLQSSEDEQNSSKQIAKDYREVSKLLNANKVDKNWVVEKHIPGFTVCEYLVKKLKSLAMSSVEKVCFCEGSISAAPYISPSLVVKDISNGQEAICIPATNEYDNPPVAPPGFTYITSVKVASNVKVPHRPNGCKCQGTCRNTRNCSCAKHNGSEFPYVRGGDRLKEARDVLFECGPKCGCGPDCGNRISQKGLKYRLEVYRTANKGWAVRTWDFIPSGAPVLEYTGVLRRTDELDKLTENEYIFEIDCLQTMNEVEGREYFFQRRLRSVSLPTKTSADEPMKNSPEFGIDAESFGNVSRFINHSCEPNLFVQCVLSSHHDISLARVVLFAADDIPPYQELTYDYGYILDSVVGPDGKIKKLPCHCGTDDCRKRLY. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03276 516 SUPERFAMILY SET domain 217 487 IPR046341 -
Seca10g03276 516 SMART PostSET_3 500 516 IPR003616 -
Seca10g03276 516 Pfam Pre-SET motif 228 328 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g03276 516 SMART preset_2 225 320 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g03276 516 SMART set_7 336 492 IPR001214 GO:0005515
Seca10g03276 516 MobiDBLite consensus disorder prediction 30 80 - -
Seca10g03276 516 ProSiteProfiles Pre-SET domain profile. 272 333 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g03276 516 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 148 509 - -
Seca10g03276 516 MobiDBLite consensus disorder prediction 60 77 - -
Seca10g03276 516 Pfam SET domain 347 486 IPR001214 GO:0005515
Seca10g03276 516 ProSiteProfiles SET domain profile. 336 486 IPR001214 GO:0005515
Seca10g03276 516 ProSiteProfiles Post-SET domain profile. 500 516 IPR003616 -
Seca10g03276 516 Gene3D SET domain 218 516 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03276 Seca-Chr10 48713565 48720535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03276 171 516 EF-hand Containing Proteins AT5G13960 57.224 7.24e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g03276 SET 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03276 K11420 - lja:Lj0g3v0265609.1 530.02