Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03264 ATGGGTGAAACACCTTCTTCACCCTCTTCATTGAGTTCAAGTTCTTGTGGTAACAAAGGTGAAGAGAAGAAAAGGAACAACAAGCGAGGAAGAGATCATGATAGTAATAATGCTGCTGATAGCAATAGCAATAGCAAGCATCCGGTTTACAGAGGAGTCCGAATGCGCACGTGGGGAAAATGGGTATCGGAAATCCGCGAGCCAAGAAAGAAGAACAGAATCTGGCTCGGAACCTTCGCCACCGCTGAGATGGCGGCGCGTGCACACGACGTCGCTGCGTTAACAATCAAAGGCTCCTCTGCTATCCTCAACTTTCCAGAACTCGCATCGTCACTGCCCCGACCCGCTTCCAACTCGCCCCGAGACGTTCAAGCTGCTGCGGCTAAAGCCGCTTACATGGAAGCCCCTCCTCCGTCACCGGCACCGTCGTCGGAGTCGGCGTCATCGACGCCGGAAGATCTCGGAGAGATAGTGGAGCTTCCATCGCTGGGGACGAGTTTCGAATCGCCCGACCCGAGTGGGGAGTTCGTGTTTTTCGACCCGGTTGATGGGTGGACCTATCCTCACCCATGGTATCACGGCATTTATGATGATGATAGTGGTGGGTACTTATCAATGCAAGACTCAGCAGATAACATGGTTCTCTCATTGTGGCCTTGA 660 0.5273 MGETPSSPSSLSSSSCGNKGEEKKRNNKRGRDHDSNNAADSNSNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELASSLPRPASNSPRDVQAAAAKAAYMEAPPPSPAPSSESASSTPEDLGEIVELPSLGTSFESPDPSGEFVFFDPVDGWTYPHPWYHGIYDDDSGGYLSMQDSADNMVLSLWP. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03264 219 MobiDBLite consensus disorder prediction 134 153 - -
Seca10g03264 219 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Seca10g03264 219 MobiDBLite consensus disorder prediction 1 17 - -
Seca10g03264 219 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Seca10g03264 219 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Seca10g03264 219 MobiDBLite consensus disorder prediction 1 51 - -
Seca10g03264 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 166 - -
Seca10g03264 219 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Seca10g03264 219 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Seca10g03264 219 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Seca10g03264 219 MobiDBLite consensus disorder prediction 18 36 - -
Seca10g03264 219 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Seca10g03264 219 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Seca10g03264 219 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03264 Seca-Chr10 48522147 48522806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03264 13 191 AP2-EREBP Transcription Factor Family AT5G11590 54.774 1.34e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g03264 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03264 K09286 - gmx:100804801 261.151