Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03241 ATGGGTTCCCAAATTAATAAGATCAGAGCAGAGAAGAAGAGTAAAAAAGAAGAGGGAGCTTCAATAGGCATCATTTTGAGATATGCTGATTGGATTGATGTGGTGCTAATGTTAATGGGTGCTTTGGGAGCAATAGGAGATGGCTTGTCCACAAACGTGTTGCTGGTGTTTGTTAGCCGTATCATGAACAGCTTAGGTTACAGTAATAACCGACAAAGTGGTGAGGCTTCCATGTCTGAGGTTGAAAAGTGCACCTTATATTTTGTCTACTTGGGATTGGCAGCTATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGGCAAGTGTTGAGAATTCGTTACAAGTATTTACAAGCTATCCTCAGACAAGAAGTGGGGTTTTTCGATTCACAAGAAGCAACTACTTCTGAAATCATTAACAGCATATCAAAGGACACTTCTCTTATACAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATATCTGGTTTAGCATTTTCCACGTACTTCTGTTGGAGGTTAGCTTTAGTAGCATTTCCAACACTGCTTTTGCTTATAATCCCTGGCATGATTTATGGCAAATACCTCATCTATTTGTCAAGATCATCCATGAAAGAGTATGGCAAAGCAAACGCCATAGTAGAACAGGCACTGAGCTCAATCAAAACGGTTTATTCATTCACTGCGGAGAAGAGAATATTGGGGAGATATTCAGATATATTAGATAGAACATCAAAGTTGGGAATCAAACAAGGCATAGCAAAAGGTCTAGCTGTAGGAAGCACAGGTCTTTCCTTTGCAATATGGGGTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGGTGAAAGCGGAGGAAAGATCTATGCAGCTGGTGTTACCTTCATAATGAGTGGACAATCCCTTGGAGTGATACTTCCTGATTTGAAGTACTTCACAGAAGCATCCATTGCTGCTACAAGAATATTTGATAGGATTGACCGAATACCAGAAATTGATGGTGAAGACACAAAGGGAATTGTGTTAGAGAGCATTCGTGGCAAGATAGATTTTGAGCATGTGAAATTCACATACCCTTCTCGCCCAGATATGGTTGTACTTAATGATTTCAATCTCCAAGTGGAAGCAGGGAAAACTGTTGCTCTAGTTGGTGCAAGTGGAAGTGGTAAGTCCACTGCAATAGCATTATTGCAAAGATTTTATGATGCAGATGAAGGTGTTGTAAGGGTTGATGGTGTGGACATAAAAAGCCTACAATTGAAATGGATAAGAGGGAAAATGGGCCTTGTAAGTCAAGAACATGCAATGTTTGGGACATCCATAAAGGAGAATATTATGTTTGGGAAGCCTGATGCTACCATGGATGAAATTGTTGCTGCAGCCACAGCTGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACCAAGATTGGAGAAAAGGGGGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTAGTTCAAAATGCCCTTGATCAGGCCTCTATGGGGAGGACTACATTGGTTGTGGCACACAAGCTATCAACAATTCGAAATGCAGACCTCATAGCAATTGTAAGTGGTGGTTGCATCATTGAAACAGGATCACATAATGAACTTATCAACTGTCCAAATGGCCACTATGCAAAACTGGCAAAATTACAAACACAATTGAGTATGGATGACCAAGATCAAAATCCAGAAACAGTTACTACTCTTTCTGCAGCAAGAAGTAGTGCAGGTAGACCAAGCACTGCCAGGTCAAGCCCTGCCATCTTTCCAAAGTCACCATTGCCTAATGACACCACTCCATCTCCTCTGTCTCACCCTTCACCTTCTTTTCCAAGGCTTCTTTACTTAAATGCCCCTGAATGGAAACAGGGTCTGATTGGAACCCTCTCAGCTATGGCCTTTGGCTCAGTTCAACCAATATATGCTTTAACCATTGGGGGTATGATTTCTGCATTTTTTGCTGAAAGCCATCAGGAGATGAGACACAGGATCAGAACTTATTGTTTAATTTTCTTTGCCATATCCATTGCTTCTATTATCCTCAATATCTTGCAACACTACAATTTTGCTTATATGGGAACCAAGTTAACTAAAAGGATAAGATTGTGCATGTTGGAGAAGATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAAAAAAACTCTAGTGGAGCATTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTAAAGTCCCTTGTTGCAGATAGACTTTCTTTACTTGTTCAAACTACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCAGTGGCTTGGAAGCTTGCTCTTGTTATGATAGCAGTGCAGCCACTTACAATTCTTTGCTTTTATACAAGAAAAGTTTTGCTCTCTACACTTTCAACCAAATTTGTTAAGGCACAGAACCAAAGTACCCAAATTGCAGTGGAGGCAGTTTATAATCACAGAATTGTGACTTCATTTGGAAGCATTGGTAAAGTTCTAAGACTATTTGATGAGGCTCAAGAGGCGCCAAGGAAGGAAGCAAGAAAGAAGTCTTGGCTAGCTGGCATTGGAATGGGTTCAGCTCAGTGCCTAACATTCATGACATGGGCTTTGGATTTCTGGTATGGTGGTACATTGGTGGAAAAGAGAGAAATATCAGCAGGGGATGTGTTCAAAACATTTTTTGTACTTGTAAGCACTGGAAAGGTCATAGCTGAAGCTGGGAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTTGCATCTGTATTTGAAATTCTTGACAGACAATCTTTAATTCCCAAGGCTGGAGATAGCACTAATGGGATTAAGTTGGAAAAGATGAATGGAAAGATAGAGTTGAAGAATGTTGATTTTGCTTATCCAAGTAGGGCAAAGACCCCAATTTTGCGCAAGTTTTGCTTGGAAGTGAAGCCAGGAAAAAGTGTTGGGCTGGTTGGGACAAGTGGATGTGGAAAATCAACAGTGATTGCTTTAATTCAAAGATTCTATGATGTTGAAAGAGGGTCAGTCAAAGTGGATAACGTGGACATAAGAGAATTAGACATTCACTGGTACAGACAACACACTGCACTAGTTAGCCAAGAACCTGTCGTATATTCTGGTACCATACGTGACAACATTCTGTTTGGAAAGCAAGAAGCCACAGAGAATGAAGTCATTGAGGCTGCAAGAGCTGCAAATGCTCATGAGTTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTACAATTGTCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTAGGAACCCAATGATACTACTGCTAGATGAGGCAACAAGTGCTCTGGATGTACAATCAGAACGAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGTAGAACTACAATTGTTGTGGCACATAGGCTTAACACCATAAAAGAGCTTGACTCAATTGCCTATGTGTCAGAGGGAAAGGTTCTGGAGCAAGGAACCTATGCTCAGCTTAAACACAAGAAAGGTGCCTTCTCCAACCTTGCTAGCCATCAAATCCAAACTTAG 3720 0.4116 MGSQINKIRAEKKSKKEEGASIGIILRYADWIDVVLMLMGALGAIGDGLSTNVLLVFVSRIMNSLGYSNNRQSGEASMSEVEKCTLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLQAILRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGLAFSTYFCWRLALVAFPTLLLLIIPGMIYGKYLIYLSRSSMKEYGKANAIVEQALSSIKTVYSFTAEKRILGRYSDILDRTSKLGIKQGIAKGLAVGSTGLSFAIWGFLAWYGSHLVMYKGESGGKIYAAGVTFIMSGQSLGVILPDLKYFTEASIAATRIFDRIDRIPEIDGEDTKGIVLESIRGKIDFEHVKFTYPSRPDMVVLNDFNLQVEAGKTVALVGASGSGKSTAIALLQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKPDATMDEIVAAATAANAHNFIRQLPEGYETKIGEKGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAIVSGGCIIETGSHNELINCPNGHYAKLAKLQTQLSMDDQDQNPETVTTLSAARSSAGRPSTARSSPAIFPKSPLPNDTTPSPLSHPSPSFPRLLYLNAPEWKQGLIGTLSAMAFGSVQPIYALTIGGMISAFFAESHQEMRHRIRTYCLIFFAISIASIILNILQHYNFAYMGTKLTKRIRLCMLEKILTFETAWFDEEKNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSIGKVLRLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRQSLIPKAGDSTNGIKLEKMNGKIELKNVDFAYPSRAKTPILRKFCLEVKPGKSVGLVGTSGCGKSTVIALIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVVYSGTIRDNILFGKQEATENEVIEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPMILLLDEATSALDVQSERVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLKHKKGAFSNLASHQIQT. 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03241 1239 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 980 - -
Seca10g03241 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Seca10g03241 1239 PANTHER ABC TRANSPORTER B FAMILY 9 687 IPR039421 -
Seca10g03241 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03241 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 601 IPR027417 -
Seca10g03241 1239 Gene3D - 353 602 IPR027417 -
Seca10g03241 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 962 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03241 1239 SUPERFAMILY ABC transporter transmembrane region 658 975 IPR036640 GO:0005524|GO:0016020
Seca10g03241 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Seca10g03241 1239 FunFam Putative ABC transporter B family member 8 643 984 - -
Seca10g03241 1239 FunFam ABC transporter B family member 1 24 360 - -
Seca10g03241 1239 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Seca10g03241 1239 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 336 - -
Seca10g03241 1239 SMART AAA_5 390 582 IPR003593 GO:0016887
Seca10g03241 1239 SMART AAA_5 1026 1218 IPR003593 GO:0016887
Seca10g03241 1239 Pfam ABC transporter 1020 1166 IPR003439 GO:0005524
Seca10g03241 1239 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Seca10g03241 1239 CDD ABC_MTABC3_MDL1_MDL2 999 1236 - -
Seca10g03241 1239 Gene3D - 989 1239 IPR027417 -
Seca10g03241 1239 Gene3D ABC transporter type 1, transmembrane domain 25 962 IPR036640 GO:0005524|GO:0016020
Seca10g03241 1239 Pfam ABC transporter transmembrane region 676 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03241 1239 Pfam ABC transporter transmembrane region 38 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03241 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1236 IPR027417 -
Seca10g03241 1239 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Seca10g03241 1239 FunFam ABC multidrug transporter SitT 989 1237 - -
Seca10g03241 1239 MobiDBLite consensus disorder prediction 607 656 - -
Seca10g03241 1239 FunFam ABC transporter B family member 4 353 609 - -
Seca10g03241 1239 SUPERFAMILY ABC transporter transmembrane region 25 347 IPR036640 GO:0005524|GO:0016020
Seca10g03241 1239 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Seca10g03241 1239 MobiDBLite consensus disorder prediction 607 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03241 Seca-Chr10 47556721 47565912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03241 11 1236 Calmodulin-binding Proteins AT2G36910 42.381 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03241 K05658 - gmx:100801088 2133.22