Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03225 ATGATTACAGGTCTTCTTCCTCCTCCTTTGCGCAATCAATTCTTTTTCAATAATACACACACTGAAAGCCAGAAGAAAACTCAAAACACCCATATGACAATAATAGCTCCATCCCGTCTTAAATTATCATTTTATTGTCTTCTGACCTTTATTCTCATCCCGAGCCATGCAGACTCTCAATCTCAGCTGCATGATCAAGAACATGCAGTCCTACTGAAGATAAAGCTGCACCTACAAAACCCACCTTTCCTCAGTCACTGGAACTCATCAAACACCTTCCACTGCTACTGGCCAGAGATCAACTGTACCAGTGGCTCTGTCACTGGATTGACTCTGGTCAACGCCAGCATCACTCAAACAATTCCACCTTTCCTATGTGACCTCACAAACCTCACATATGTTGATTTCAGCCAAAATTTCATTCCTGGGGAGTTCCCAACATATCTATACCAGTGTTCCAAGCTGGAGTACCTTGACCTGTCATTGAACAACTTTGTTGGTAACATTCCTCATGACATTGATCGCTTGGTTAACTTGCAACATCTTAACCTTGGTATGACTAACTTCAGTGGTGACATTCCTGCAAGTATTGGAAGGTTGAAGGAACTGAGATTCCTTCAACTTCAATTTTGTCTATTTAATGGTACTTTCCCTGCTGAGATTGGCAACTTGTTCAATCTTGAATTCTTGGACATTTCCTCTAACTTCTTGCTCCCTCCATGGAAAATCCCACCAAGCTTGACCAAGTTGAAGAAATTGAAGTTCCTTCATATGTACTTTTGCAACTTGGTAGGGGAAATCCCTCAAGCCATTGGAGAAATGGCAGCATTGGAGAACTTGGATATATCACAAAACAATTTAACTGGACACATTCCCAGCGGTTTGTTCATGCTGAAGAATTTGAGCATCCTGTACCTTCAGAAAAACCGTTTTTATGGGGAGATACCTGCTGTGGTTGAAGCATTAAATTTGACTGCCCTGGATCTTGCAGTAAACAATCTTACAGGGGAAATACCAGATGATTTTAGAAAGCTCCAAAAGTTATGGTGGTTGAGTTTGTCCACGAATAACTTGTCAGGGGAGATACCACAAAGCATTGGTCGTTTTCCATCTCTGACAGATTTTCGTGTCTTTATGAACAACTTGTCAGGTACTCTTCCTCCTGACTTTGGTCGCTACTCAAAGCTTGAAAGTTTTCATATTGCATCTAACAATTTTAGGGGAAGGCTACCAGAGAACTTGTGCTATCATGGTAAGTTGCTTAATTTAACTGTTTATGAAAATCATCTCACTGGGGAGTTGCCAGAATCACTTGGAAGATGCAGTAGCCTGCTGGATCTGAAAATTCACAGAAATGAATTTTCTGGTAAAATTCCCAGTGGTCTTTGGACTTCAAATTTAGTGAATTTCATGGTAAGCAACAATAAGTTCACTGGTGAGCTCCCTGAAAGATTGTCTTCAAGTATTTCACGCTTTGAGATAAGTTACAATCAGTTTTATGGTAGAATTCCAACTGAGGTATCTTCCTGGACAAATGTGGTAGTGTTCGATGCCAGTAAGAACTACCTTAATGGTAGTATTCCACAAGGGCTAACGGCTCTTCCCAAGCTCACAACTCTGTTGCTTGATCAGAACCAGCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGATTCTGGATTTGAGCCAAAACCAACTCTCTGGAAAAATCCCAGATGCAATTGGTAGGTTACCTGTCCTTAGTGTGCTTGACTTGTCAGAAAATCAATTCTCTGGCCAAATTCCTTCTATACTTCCCAGAATCACCAATCTCAATCTTTCCTCCAATAATTTGACTGGGAGGATTCCAAGTGAATTTGAAAATTCTGCATTTGCCAGCAGTTTTTTGAACAACTCTGGTCTTTGTTCTGATACCCCAGCACTGAACCTTACCTTTTGCAATTCTAACCTCAAAAGGTCAACCAAAGGCTCACCTTGGTCTCTTGCTTTGATTATGAGCCTGGTGGTAGTATCCTTCTTGCTGGCTTTGTCGACAGCACTCTTGATTATCAAACTTCACAGAAAAAGTAAGCAAGTGTTGGACAACTCATGGAAGCTCATTTCCTTTCAAAGGCTGAGTTTCACAGAATCAAACATAGTGTCCTCAATGACAGAACATAATATCATTGGCAGTGGTGGATTTGGTACAGTACACCGTGTCCCTGTTGATGGTTTAGGCTTTGTTGCTGTGAAAAAGATCTTGAACAACAGAAAGTTAGATAAAAAGCTTGAGAGCTCATTCCATGCAGAAGTTAAAATATTGAGCAATATTCGTCATTATAATATTGTGAAGTTGTTGTGCTGTATCTCTAATGAGGATTCAATGCTCCTTGTGTATGAGTATCTGGAAAACCGTAGCCTAGATAGGTGGCTGTACAACAAGAATAAGTCATCAGCTGTGTCGGCTTCAGCCAATCATTTTGCCCTTGATTGGCCAAAGAGATTGCAAATAGCCATTGGGGTTGCCCATGGTTTGTCCTACATGCACCATGACTGCTCACCACCAATTGTACATCGAGATATTAAAGCAAGCAACATCCTTTTGGATTCTCAATTCAATGCAAAAGTTGCAGATTTTGGTCTGGCTAGGATGTTAATGAAGCCAGGGCAATTTAACACCATGTCAGCTGTGATGGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTCGAGTCAGCGAAAAGATTGATGTCTATAGCTTTGGGGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGTCATGGCGTCATGTTCATGTAGGAAGCAATATAGAAGAGCTGCTAGACAATGATCTTGTGGAACCTAGTTACTTGGATGAAATGTGCTGTGTTTTCAAACTTGGGATCATGTGTACTACAACACTTCCTGTTAGAAGGCCTTCCATGAAGGAGGTCCTACACATATTGCTCCGCTGTGGAGAAGGATTTACACTTGGAGAGAGGATTATTGGGCAATATGAAGCTGTTCCTCTTCTTAAGAATTCAAAAAGGGAGAGTAGGTTGGATGTTGTTGATAATGATAGTGACTAA 3129 0.4094 MITGLLPPPLRNQFFFNNTHTESQKKTQNTHMTIIAPSRLKLSFYCLLTFILIPSHADSQSQLHDQEHAVLLKIKLHLQNPPFLSHWNSSNTFHCYWPEINCTSGSVTGLTLVNASITQTIPPFLCDLTNLTYVDFSQNFIPGEFPTYLYQCSKLEYLDLSLNNFVGNIPHDIDRLVNLQHLNLGMTNFSGDIPASIGRLKELRFLQLQFCLFNGTFPAEIGNLFNLEFLDISSNFLLPPWKIPPSLTKLKKLKFLHMYFCNLVGEIPQAIGEMAALENLDISQNNLTGHIPSGLFMLKNLSILYLQKNRFYGEIPAVVEALNLTALDLAVNNLTGEIPDDFRKLQKLWWLSLSTNNLSGEIPQSIGRFPSLTDFRVFMNNLSGTLPPDFGRYSKLESFHIASNNFRGRLPENLCYHGKLLNLTVYENHLTGELPESLGRCSSLLDLKIHRNEFSGKIPSGLWTSNLVNFMVSNNKFTGELPERLSSSISRFEISYNQFYGRIPTEVSSWTNVVVFDASKNYLNGSIPQGLTALPKLTTLLLDQNQLTGPLPSDIISWKSLVILDLSQNQLSGKIPDAIGRLPVLSVLDLSENQFSGQIPSILPRITNLNLSSNNLTGRIPSEFENSAFASSFLNNSGLCSDTPALNLTFCNSNLKRSTKGSPWSLALIMSLVVVSFLLALSTALLIIKLHRKSKQVLDNSWKLISFQRLSFTESNIVSSMTEHNIIGSGGFGTVHRVPVDGLGFVAVKKILNNRKLDKKLESSFHAEVKILSNIRHYNIVKLLCCISNEDSMLLVYEYLENRSLDRWLYNKNKSSAVSASANHFALDWPKRLQIAIGVAHGLSYMHHDCSPPIVHRDIKASNILLDSQFNAKVADFGLARMLMKPGQFNTMSAVMGSFGYMAPEYVQTTRVSEKIDVYSFGVILLELTTGKEANYGDEHSSLAEWSWRHVHVGSNIEELLDNDLVEPSYLDEMCCVFKLGIMCTTTLPVRRPSMKEVLHILLRCGEGFTLGERIIGQYEAVPLLKNSKRESRLDVVDNDSD. 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03225 1042 Pfam Protein kinase domain 723 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03225 1042 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 323 1002 - -
Seca10g03225 1042 Gene3D Ribonuclease Inhibitor 66 175 IPR032675 -
Seca10g03225 1042 Gene3D Transferase(Phosphotransferase) domain 1 800 1009 - -
Seca10g03225 1042 Pfam Leucine rich repeat N-terminal domain 65 102 IPR013210 -
Seca10g03225 1042 Gene3D Ribonuclease Inhibitor 374 652 IPR032675 -
Seca10g03225 1042 SUPERFAMILY Protein kinase-like (PK-like) 713 1002 IPR011009 -
Seca10g03225 1042 ProSiteProfiles Protein kinase domain profile. 721 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03225 1042 SMART LRR_typ_2 345 369 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 176 200 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 274 298 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 224 250 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 128 152 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 534 558 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 559 582 IPR003591 -
Seca10g03225 1042 SMART LRR_typ_2 603 626 IPR003591 -
Seca10g03225 1042 Gene3D Phosphorylase Kinase; domain 1 697 799 - -
Seca10g03225 1042 FunFam Receptor-like protein kinase HSL1 isoform A 64 215 - -
Seca10g03225 1042 SUPERFAMILY L domain-like 78 406 - -
Seca10g03225 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 854 866 IPR008271 GO:0004672|GO:0006468
Seca10g03225 1042 FunFam Receptor-like protein kinase HSL1 isoform A 328 651 - -
Seca10g03225 1042 SUPERFAMILY RNI-like 322 626 - -
Seca10g03225 1042 Gene3D Ribonuclease Inhibitor 242 373 IPR032675 -
Seca10g03225 1042 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 220 320 - -
Seca10g03225 1042 ProSitePatterns Protein kinases ATP-binding region signature. 727 750 IPR017441 GO:0005524
Seca10g03225 1042 FunFam Kinase family with leucine-rich repeat domain-containing protein 703 799 - -
Seca10g03225 1042 SMART serkin_6 721 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03225 1042 FunFam Kinase family with leucine-rich repeat domain-containing protein 800 1018 - -
Seca10g03225 1042 Gene3D Ribonuclease Inhibitor 176 241 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03225 Seca-Chr10 47123014 47126646 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03225 61 1040 Receptor kinase-like Gene Family AT5G25930 51.163 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca10g03225 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03225 - - gmx:100819744 1485.7