Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03220 ATGAAAAGTTTAACACTTTCATGTCTTAAATTGCTATTTCACCATCTTGTAACCTTTTTCCTCATCCTGAGCCATGTAAACTCTCAGTCTCAGCCTCAGCTGTATGATCAAGAACATGAAGTCCTATTGAAGATAAAACAGTACCTTGATAACCCCTCATTCCTCAATCACTGGACCCAATCAAACTCCTCTCACTGCTCTTGGCCAGAGATCACTTGCACCAATGGCTCTGTCACTGAACTCACTCTGGTTAGCACCAACATTGAACAGACTATACCACCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCAATGACAATTTCATTCCTGGGGAGTTCCCAACATATCTCTACAACTGTTCCAAGTTGGAGTACCTTGACCTGTCCATGAACAACTTTGTTGGTAAGATTCCTGATGACATTGATCGCTTGGTTAACTTGCAGTATCTTAATCTCAGTTACACCAACTTCTCTGGTGACATTCCTGCCAGTATTGGAAGGCTAAAGGAACTGAGATACCTTGCACTTCAATATTGTCTATTCAATGGAACATTCCCTGATGAGATTGGAAACTTGTCCAATCTTGAAATCTTGGATTTGTCCTCCAACAACTTGTTCCTTCCTTCAAGGGTGCCCACAAACTGGACCCAATTGAACAAAGTGAAGATCTTTTATTTGTATGACTCCAACCTGGTTGGGGAAATTCCTGAAAGCATTGGAGAAATGGTGGCTTTGGAGAAATTGGATATATCAAAAAACAGTTTAACTGGCCACATTCCAGAAGGTTTATTCACTCTGAAGAATCTGAGCATATTGTATCTTTACAGAAACAGTCTTTCTGGGGAGATACCAAGTGTGGTTGAAGCATTAAATTTGACTGTCATTGATTTTACAAGGAATCATCTTACAGGGAAAATACCAGAAGATTTTGGAAAGCTTCAAAAGTTGACTGGCCTGTCTTTGTCTATGAACAACTTGTCAGGGGAGATACCACAAGGCATAGACCGTTTTCCATCTCTCATAGATTTTCGTGTCTTTATGAACAACTTGTCAGGTACCCTTCCTCCTGACTTTGGTCGCTACTCAAAGCTTGGAAGTTTTCATATTGCTTCTAACAATTTTAGGGGAAAGCTACCAGAGAACTTGTGCTATCATGGTGAGTTGCGTAATTTAACTGTTTATGAAAATCATCTCACTGGGGAGTTACCAGAATCACTTGGAAATTGTAGCAGCTTGCTTGAACTTAAAATTTATAGCAATGAGTTTTCTGGTAATATTCCTAGTGGTCTTTGGAATTCAAATTTGTTGAATTTCATGGTAAGCAATAATAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTCAAGTATTTCACGTTTTGAGATAAGTAACAATCAGTTTTATGGTAGAATTCCAACTGGGGTATCTTCCTGGACAAATGTGGTAGTGTTTGAAGCCAGTGAGAACTACCTTAATGGTAGTATTCCACAAGGGCTAACAGCTCTTCCCAAGCTACAAACTTTGTTGCTTGATCAGAACCAGCTCACTGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGATTCTGGATTTGAGCCATAACCAACTCTCTGGAAAAATCCCAGATGCAATTGGTAGGTTACCTGTCCTTAGTGAACTTGACTTGTCAGAAAATCAATTATCTGGCCAAATTCCTTCTGTATTTCCCAGAATCACCAATCTCAATCTTTCCTCCAATAATTTGACTGGGAGGATTCCAAGTGAATTTGAAAATTCTGCATTTGCCAGCAGTTTTTTGAACAATTCTGGTCTTTGTTCTGATACCCCAGCACTGAACCTTACCTTGTGCAATTCTGTCCCTCAAAGTTCAAGCAAGGACTCATCTTGGTCTCCTGCTTTGATTATAGGCCTCGTGGTAGTGGTTCTCATAATGGCTTTATTGGCATCACTATTGATTATCAGACTCTACAGAAAAAGAAAGCAAGGATTGGATAAATCATGGAAGCTCATTGCCTTTCAAAGGCTGAGTTTCACTGAATCAAATATAGTGTCCTCACTGACAGAACATAACATTATTGGCAATGGTGGATTTGGTATAGTATACCGTGTGCCTATTGATGATTTAGGCTATGTTGCTGTGAAGAAGATTTGGGAAAACAGAAAGTTAGACCAGAATCTTGAGAGCTCATTTCATGCTGAAGTTAAGATATTGAGCAATATTCGTCATAGGAACATTGTGAAGTTGTTGTGTTGTATCTCTAATGATGATACCATGCTCCTTGTGTATGAGTATGTGGAAAACCGTAGCCTTGACAGGTGGCTGCACAAGAAGATTAAGCTATCAGCTGTGTCAGAATATGTTCAAACAACTAGAGTCAGTGAAAAGATTGATGTCTATAGCTTTGGGGTTATCCTATTGGAATTGACAACTGGTAAAGAAGCTAACAATGGAGATGAACATTCATCTCTAGCAGAATGGGCAAGGCGTCACTACCAAATAGGAAGCAAGATAGAAGAACTGCTAGACAAAGAAGTCACAGAGCCAAGTTACTTGGATGGGATGTGTAAGGTTTTCAAACTTGGGGTCATGTGTACTGCAACACATCCTGCTAGTAGACCTTCCATGAAGGAGTCTCAGGCTGTGTTGTATGATCAAGAACATACAGTCCTATTGAAGATAAAGAACTACCTACAAAACCCATCATTTCTCAGTCACTGGACCCCATCAAACTCTTCACACTGCTCTTGGCCAGAGATCACTTGCACCAATGGTTCTGTCACTGCACTGGCTTTGATCAATACCAACATCACTCAAACATTACCACCTTTCTTATGTGACCTCACAAATCTCACTTACATTGATTTTCAATTGAATTACCTTCCTGGGGAGTTTCCAACTTCTCTCTACAACTGCTCCAAGCTTGAGCACCTTGATCTCTCTCAGAACTTCTTTGTTGGTAAGATTCCTGATGACATTAACCGCTTGGCTAAGCTGCGTTTCCTTAGCCTTGGTGCCAACAACTTTTCTGGTGATATTCCTGGGAGCATTGGGGGGTTGAAGGAGCTAAGAAGTCTTCAACTTTATCAGTGTCCTTTCAATGGTACTTTGCCTGCTGATATTGGCAATTTGTCCAACCTTGAGACCTTGTACATGTTCTCAAACAGCATGCTCCCTCCCACAAAGTTTCCATCAAGCTTGATCAAGTTGAACAAATTGAGGGTCTTTTATATGTATGACTCCAACTTGGTTGGGGAAATCCCTGAAACCATTGGGGAAATGGTGGCATTGGAGGAACTGGATTTATCAGGAAATCAATTAAGTGGACAAATTCCAAATGGTTTGTTCACTATGAAAAATCTGAGCATACTTTTTCTTTACAATAACAGCCTTTCTGGGGAGATACCTGGAGTGATTGAAGCATACAACTTAACAATGCTTGATCTTTCAGAGAATGATCTCACTGGGAAAATACCAGATGATTTGGGAAAGCTCAAAAAGTTAACTGCCTTGGCTTTGTCTATGAATCAACTATCTGGGGAGGTACCAGAAAGCATTGGTCTTCTGCCAGCTCTGACTGATTTTATTGTTTTTCTCAACAATTTATCAGGTACTCTTCCTCCAGATTTTGGCCGGTTTTCAATGCTTGAAACTTTTCAGGTTGCATCTAATAGTTTCACAGGAAGCCTGCCAGAGAACTTGTGCTATTATGGAAGGTTTGTTGGTTTAACTGCTTATGACAATAACTTGAGTGGGGAGTTGCCAGAATCACTAGGTAGTTGTAGTAGCCTGCAATATCTGAGAGTTGAGAATAATGAGTTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTATGAATTTGTCAACAATTATGATAAGTGAGAACAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTGGAATCTTTCAGTCCTGGCCATAAGTTACAATCAATTCTCTGGTAGAATTCCACATGGAGTGTCTTCCTGGAAGAATGTGGTGGTTTTCAATGCCAGTAGCAACCTCTTCAATGGAAGTATTCCACTGGAGCTAACATCTCTTCCCCACCTAACAACTCTTCTGCTTGATCAGAACCAGCTCAGTGGGCCACTTCCATCAGATATAACATCATGGAAGTCCCTAATAACTCTAAACCTGAGCCACAACCAACTCTCTGGAGAAATTCCAGATACAATTGGTCAGTTACCTTCCCTTAATATATTGGACTTGTCAGAAAACAAAATCTCTGGCCAAATTCCATCTCAACTAGCCATTATGAGGCTTACAAATCTCAATCTGTCTTCCAATCATTTTACAGGGAGGATTCCAAGTGAATTTGAAAACCTTGTATATGCCAGCAGTTTCTTGAACAATTCTGGTCTCTGTGCTAATACCCCTGTACTAAACCTTACCTTGTGCAATTCTGGCCCCAAAAGGGCAAGAAATGGCTCTTCTGTGTCTCATGCTATGATCATAAGCCTAGTGGTGGCATCCTCCTTACTGGCTTTCTTGTCATCACTCTTGATGATCACAATTTACAGAAAGAGAAAGCAAGAACTGAAGAAGTCATGGAAGCTCACTTCCTTTCAAAGGCTGAGTTTCACAAAATCAAACATTGTGTCATCAATGACAGAACATAATATCATTGGCAGTGGTGGATTTGGAGCAGTATACCGTGTTGCTATTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAGTAGCAGAAAATTAGAGGAGAAGCTTGTGAATTCATTTCTTGCAGAAGTGGAAATACTAAGCAACATTCGTCATAACAACATTGTAAAGTTGATGTGTTGTATCTCCAGTGAGGATTCTCTGCTCCTTGTCTATGAGTATCTGGAAAACCATAGCCTTGATAGGTGGCTGCACAAGAAAAGTAAGCAATCAGTTGCAGAATATGCTCAAACAACAAGAGTCAATGAGAAGATAGATGTCTATAGCTTTGGAGTAATCCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGATGAATACTCATCTCTTGCAGAATGGGCTTGGCGCCACATTCAGGTAGGAAGCAACATAGAAGATCTTCTAGATGATGAAATTGTGGAACCTAGTTACTCGGATGAAATGTGCAACATCTTCAAACTTGGAGTGATGTGCACTTCAACACTGCCAGCTAGTAGACCTTCCATGAAGGAGGTCTTGAAGATATTGCTCAACTGCAACGATCTACATGTCATTGGAGAGAAGAGTGTTGGTTTCTATGATGCTGTTCCACTTCTTAAGCATTCAAAATGGGAAAAGCAGGAGGAGTATGATGATGATAGCTTTGTAGGTGGCATCACAGTTTGA 5370 0.4028 MKSLTLSCLKLLFHHLVTFFLILSHVNSQSQPQLYDQEHEVLLKIKQYLDNPSFLNHWTQSNSSHCSWPEITCTNGSVTELTLVSTNIEQTIPPFICDLKNLTHVDFNDNFIPGEFPTYLYNCSKLEYLDLSMNNFVGKIPDDIDRLVNLQYLNLSYTNFSGDIPASIGRLKELRYLALQYCLFNGTFPDEIGNLSNLEILDLSSNNLFLPSRVPTNWTQLNKVKIFYLYDSNLVGEIPESIGEMVALEKLDISKNSLTGHIPEGLFTLKNLSILYLYRNSLSGEIPSVVEALNLTVIDFTRNHLTGKIPEDFGKLQKLTGLSLSMNNLSGEIPQGIDRFPSLIDFRVFMNNLSGTLPPDFGRYSKLGSFHIASNNFRGKLPENLCYHGELRNLTVYENHLTGELPESLGNCSSLLELKIYSNEFSGNIPSGLWNSNLLNFMVSNNKFTGELPERLSSSISRFEISNNQFYGRIPTGVSSWTNVVVFEASENYLNGSIPQGLTALPKLQTLLLDQNQLTGPLPSDIISWKSLVILDLSHNQLSGKIPDAIGRLPVLSELDLSENQLSGQIPSVFPRITNLNLSSNNLTGRIPSEFENSAFASSFLNNSGLCSDTPALNLTLCNSVPQSSSKDSSWSPALIIGLVVVVLIMALLASLLIIRLYRKRKQGLDKSWKLIAFQRLSFTESNIVSSLTEHNIIGNGGFGIVYRVPIDDLGYVAVKKIWENRKLDQNLESSFHAEVKILSNIRHRNIVKLLCCISNDDTMLLVYEYVENRSLDRWLHKKIKLSAVSEYVQTTRVSEKIDVYSFGVILLELTTGKEANNGDEHSSLAEWARRHYQIGSKIEELLDKEVTEPSYLDGMCKVFKLGVMCTATHPASRPSMKESQAVLYDQEHTVLLKIKNYLQNPSFLSHWTPSNSSHCSWPEITCTNGSVTALALINTNITQTLPPFLCDLTNLTYIDFQLNYLPGEFPTSLYNCSKLEHLDLSQNFFVGKIPDDINRLAKLRFLSLGANNFSGDIPGSIGGLKELRSLQLYQCPFNGTLPADIGNLSNLETLYMFSNSMLPPTKFPSSLIKLNKLRVFYMYDSNLVGEIPETIGEMVALEELDLSGNQLSGQIPNGLFTMKNLSILFLYNNSLSGEIPGVIEAYNLTMLDLSENDLTGKIPDDLGKLKKLTALALSMNQLSGEVPESIGLLPALTDFIVFLNNLSGTLPPDFGRFSMLETFQVASNSFTGSLPENLCYYGRFVGLTAYDNNLSGELPESLGSCSSLQYLRVENNEFSGNIPSGLWTSMNLSTIMISENKFTGELPERLSWNLSVLAISYNQFSGRIPHGVSSWKNVVVFNASSNLFNGSIPLELTSLPHLTTLLLDQNQLSGPLPSDITSWKSLITLNLSHNQLSGEIPDTIGQLPSLNILDLSENKISGQIPSQLAIMRLTNLNLSSNHFTGRIPSEFENLVYASSFLNNSGLCANTPVLNLTLCNSGPKRARNGSSVSHAMIISLVVASSLLAFLSSLLMITIYRKRKQELKKSWKLTSFQRLSFTKSNIVSSMTEHNIIGSGGFGAVYRVAIDGLGYVAVKKIWSSRKLEEKLVNSFLAEVEILSNIRHNNIVKLMCCISSEDSLLLVYEYLENHSLDRWLHKKSKQSVAEYAQTTRVNEKIDVYSFGVILLELTTGKEANHGDEYSSLAEWAWRHIQVGSNIEDLLDDEIVEPSYSDEMCNIFKLGVMCTSTLPASRPSMKEVLKILLNCNDLHVIGEKSVGFYDAVPLLKHSKWEKQEEYDDDSFVGGITV. 1790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03220 1789 Pfam Leucine Rich repeats (2 copies) 1385 1422 IPR025875 -
Seca10g03220 1789 FunFam Receptor-like protein kinase HSL1 isoform A 889 1040 - -
Seca10g03220 1789 Gene3D Phosphorylase Kinase; domain 1 1525 1627 - -
Seca10g03220 1789 ProSiteProfiles Protein kinase domain profile. 692 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03220 1789 ProSiteProfiles Protein kinase domain profile. 1549 1789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03220 1789 SUPERFAMILY RNI-like 292 597 - -
Seca10g03220 1789 ProSitePatterns Protein kinases ATP-binding region signature. 1555 1578 IPR017441 GO:0005524
Seca10g03220 1789 Pfam Leucine Rich Repeat 979 998 IPR001611 GO:0005515
Seca10g03220 1789 Pfam Leucine Rich Repeat 1102 1119 IPR001611 GO:0005515
Seca10g03220 1789 Pfam Leucine Rich Repeat 1433 1455 IPR001611 GO:0005515
Seca10g03220 1789 SMART LRR_sd22_2 245 268 - -
Seca10g03220 1789 SMART LRR_sd22_2 953 979 - -
Seca10g03220 1789 SMART LRR_sd22_2 269 295 - -
Seca10g03220 1789 SMART LRR_sd22_2 1099 1122 - -
Seca10g03220 1789 SMART LRR_sd22_2 195 223 - -
Seca10g03220 1789 SMART LRR_sd22_2 529 561 - -
Seca10g03220 1789 SMART LRR_sd22_2 316 339 - -
Seca10g03220 1789 SMART LRR_sd22_2 99 131 - -
Seca10g03220 1789 SUPERFAMILY RNI-like 1147 1456 - -
Seca10g03220 1789 Pfam Protein kinase domain 1551 1644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03220 1789 Pfam Protein kinase domain 694 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03220 1789 PRINTS Leucine-rich repeat signature 1102 1115 - -
Seca10g03220 1789 PRINTS Leucine-rich repeat signature 1408 1421 - -
Seca10g03220 1789 SUPERFAMILY Protein kinase-like (PK-like) 689 898 IPR011009 -
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 1003 1065 IPR032675 -
Seca10g03220 1789 ProSiteProfiles Leucine-rich repeat profile. 1386 1408 IPR001611 GO:0005515
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 891 1002 IPR032675 -
Seca10g03220 1789 FunFam Receptor-like protein kinase HSL1 isoform A 35 186 - -
Seca10g03220 1789 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Seca10g03220 1789 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Seca10g03220 1789 Pfam Leucine rich repeat N-terminal domain 891 927 IPR013210 -
Seca10g03220 1789 SMART LRR_typ_2 245 269 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 1099 1123 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 505 529 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 1360 1384 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 553 576 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 195 221 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 316 340 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 1408 1432 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 1001 1025 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 1170 1194 IPR003591 -
Seca10g03220 1789 SMART LRR_typ_2 147 171 IPR003591 -
Seca10g03220 1789 SUPERFAMILY L domain-like 44 378 - -
Seca10g03220 1789 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 191 291 - -
Seca10g03220 1789 SUPERFAMILY L domain-like 896 1236 - -
Seca10g03220 1789 Gene3D Transferase(Phosphotransferase) domain 1 1630 1756 - -
Seca10g03220 1789 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 1066 1201 IPR032675 -
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 1202 1479 IPR032675 -
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 346 622 IPR032675 -
Seca10g03220 1789 Gene3D Transferase(Phosphotransferase) domain 1 784 890 - -
Seca10g03220 1789 SUPERFAMILY Protein kinase-like (PK-like) 1547 1748 IPR011009 -
Seca10g03220 1789 FunFam Receptor-like protein kinase HSL1 isoform A 1153 1479 - -
Seca10g03220 1789 Gene3D Phosphorylase Kinase; domain 1 664 770 - -
Seca10g03220 1789 FunFam Kinase family with leucine-rich repeat domain-containing protein 674 770 - -
Seca10g03220 1789 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1646 1744 - -
Seca10g03220 1789 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 1045 1145 - -
Seca10g03220 1789 FunFam Receptor-like protein kinase HSL1 isoform A 299 622 - -
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 35 211 IPR032675 -
Seca10g03220 1789 Gene3D Ribonuclease Inhibitor 212 345 IPR032675 -
Seca10g03220 1789 FunFam Receptor-like protein kinase HSL1 1529 1627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03220 Seca-Chr10 47054948 47063543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03220 33 891 Receptor kinase-like Gene Family AT5G25930 43.414 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca10g03220 Pkinase 2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03220 - - gmx:100785907 1187.17