Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g03220 | ATGAAAAGTTTAACACTTTCATGTCTTAAATTGCTATTTCACCATCTTGTAACCTTTTTCCTCATCCTGAGCCATGTAAACTCTCAGTCTCAGCCTCAGCTGTATGATCAAGAACATGAAGTCCTATTGAAGATAAAACAGTACCTTGATAACCCCTCATTCCTCAATCACTGGACCCAATCAAACTCCTCTCACTGCTCTTGGCCAGAGATCACTTGCACCAATGGCTCTGTCACTGAACTCACTCTGGTTAGCACCAACATTGAACAGACTATACCACCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCAATGACAATTTCATTCCTGGGGAGTTCCCAACATATCTCTACAACTGTTCCAAGTTGGAGTACCTTGACCTGTCCATGAACAACTTTGTTGGTAAGATTCCTGATGACATTGATCGCTTGGTTAACTTGCAGTATCTTAATCTCAGTTACACCAACTTCTCTGGTGACATTCCTGCCAGTATTGGAAGGCTAAAGGAACTGAGATACCTTGCACTTCAATATTGTCTATTCAATGGAACATTCCCTGATGAGATTGGAAACTTGTCCAATCTTGAAATCTTGGATTTGTCCTCCAACAACTTGTTCCTTCCTTCAAGGGTGCCCACAAACTGGACCCAATTGAACAAAGTGAAGATCTTTTATTTGTATGACTCCAACCTGGTTGGGGAAATTCCTGAAAGCATTGGAGAAATGGTGGCTTTGGAGAAATTGGATATATCAAAAAACAGTTTAACTGGCCACATTCCAGAAGGTTTATTCACTCTGAAGAATCTGAGCATATTGTATCTTTACAGAAACAGTCTTTCTGGGGAGATACCAAGTGTGGTTGAAGCATTAAATTTGACTGTCATTGATTTTACAAGGAATCATCTTACAGGGAAAATACCAGAAGATTTTGGAAAGCTTCAAAAGTTGACTGGCCTGTCTTTGTCTATGAACAACTTGTCAGGGGAGATACCACAAGGCATAGACCGTTTTCCATCTCTCATAGATTTTCGTGTCTTTATGAACAACTTGTCAGGTACCCTTCCTCCTGACTTTGGTCGCTACTCAAAGCTTGGAAGTTTTCATATTGCTTCTAACAATTTTAGGGGAAAGCTACCAGAGAACTTGTGCTATCATGGTGAGTTGCGTAATTTAACTGTTTATGAAAATCATCTCACTGGGGAGTTACCAGAATCACTTGGAAATTGTAGCAGCTTGCTTGAACTTAAAATTTATAGCAATGAGTTTTCTGGTAATATTCCTAGTGGTCTTTGGAATTCAAATTTGTTGAATTTCATGGTAAGCAATAATAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTCAAGTATTTCACGTTTTGAGATAAGTAACAATCAGTTTTATGGTAGAATTCCAACTGGGGTATCTTCCTGGACAAATGTGGTAGTGTTTGAAGCCAGTGAGAACTACCTTAATGGTAGTATTCCACAAGGGCTAACAGCTCTTCCCAAGCTACAAACTTTGTTGCTTGATCAGAACCAGCTCACTGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGATTCTGGATTTGAGCCATAACCAACTCTCTGGAAAAATCCCAGATGCAATTGGTAGGTTACCTGTCCTTAGTGAACTTGACTTGTCAGAAAATCAATTATCTGGCCAAATTCCTTCTGTATTTCCCAGAATCACCAATCTCAATCTTTCCTCCAATAATTTGACTGGGAGGATTCCAAGTGAATTTGAAAATTCTGCATTTGCCAGCAGTTTTTTGAACAATTCTGGTCTTTGTTCTGATACCCCAGCACTGAACCTTACCTTGTGCAATTCTGTCCCTCAAAGTTCAAGCAAGGACTCATCTTGGTCTCCTGCTTTGATTATAGGCCTCGTGGTAGTGGTTCTCATAATGGCTTTATTGGCATCACTATTGATTATCAGACTCTACAGAAAAAGAAAGCAAGGATTGGATAAATCATGGAAGCTCATTGCCTTTCAAAGGCTGAGTTTCACTGAATCAAATATAGTGTCCTCACTGACAGAACATAACATTATTGGCAATGGTGGATTTGGTATAGTATACCGTGTGCCTATTGATGATTTAGGCTATGTTGCTGTGAAGAAGATTTGGGAAAACAGAAAGTTAGACCAGAATCTTGAGAGCTCATTTCATGCTGAAGTTAAGATATTGAGCAATATTCGTCATAGGAACATTGTGAAGTTGTTGTGTTGTATCTCTAATGATGATACCATGCTCCTTGTGTATGAGTATGTGGAAAACCGTAGCCTTGACAGGTGGCTGCACAAGAAGATTAAGCTATCAGCTGTGTCAGAATATGTTCAAACAACTAGAGTCAGTGAAAAGATTGATGTCTATAGCTTTGGGGTTATCCTATTGGAATTGACAACTGGTAAAGAAGCTAACAATGGAGATGAACATTCATCTCTAGCAGAATGGGCAAGGCGTCACTACCAAATAGGAAGCAAGATAGAAGAACTGCTAGACAAAGAAGTCACAGAGCCAAGTTACTTGGATGGGATGTGTAAGGTTTTCAAACTTGGGGTCATGTGTACTGCAACACATCCTGCTAGTAGACCTTCCATGAAGGAGTCTCAGGCTGTGTTGTATGATCAAGAACATACAGTCCTATTGAAGATAAAGAACTACCTACAAAACCCATCATTTCTCAGTCACTGGACCCCATCAAACTCTTCACACTGCTCTTGGCCAGAGATCACTTGCACCAATGGTTCTGTCACTGCACTGGCTTTGATCAATACCAACATCACTCAAACATTACCACCTTTCTTATGTGACCTCACAAATCTCACTTACATTGATTTTCAATTGAATTACCTTCCTGGGGAGTTTCCAACTTCTCTCTACAACTGCTCCAAGCTTGAGCACCTTGATCTCTCTCAGAACTTCTTTGTTGGTAAGATTCCTGATGACATTAACCGCTTGGCTAAGCTGCGTTTCCTTAGCCTTGGTGCCAACAACTTTTCTGGTGATATTCCTGGGAGCATTGGGGGGTTGAAGGAGCTAAGAAGTCTTCAACTTTATCAGTGTCCTTTCAATGGTACTTTGCCTGCTGATATTGGCAATTTGTCCAACCTTGAGACCTTGTACATGTTCTCAAACAGCATGCTCCCTCCCACAAAGTTTCCATCAAGCTTGATCAAGTTGAACAAATTGAGGGTCTTTTATATGTATGACTCCAACTTGGTTGGGGAAATCCCTGAAACCATTGGGGAAATGGTGGCATTGGAGGAACTGGATTTATCAGGAAATCAATTAAGTGGACAAATTCCAAATGGTTTGTTCACTATGAAAAATCTGAGCATACTTTTTCTTTACAATAACAGCCTTTCTGGGGAGATACCTGGAGTGATTGAAGCATACAACTTAACAATGCTTGATCTTTCAGAGAATGATCTCACTGGGAAAATACCAGATGATTTGGGAAAGCTCAAAAAGTTAACTGCCTTGGCTTTGTCTATGAATCAACTATCTGGGGAGGTACCAGAAAGCATTGGTCTTCTGCCAGCTCTGACTGATTTTATTGTTTTTCTCAACAATTTATCAGGTACTCTTCCTCCAGATTTTGGCCGGTTTTCAATGCTTGAAACTTTTCAGGTTGCATCTAATAGTTTCACAGGAAGCCTGCCAGAGAACTTGTGCTATTATGGAAGGTTTGTTGGTTTAACTGCTTATGACAATAACTTGAGTGGGGAGTTGCCAGAATCACTAGGTAGTTGTAGTAGCCTGCAATATCTGAGAGTTGAGAATAATGAGTTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTATGAATTTGTCAACAATTATGATAAGTGAGAACAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTGGAATCTTTCAGTCCTGGCCATAAGTTACAATCAATTCTCTGGTAGAATTCCACATGGAGTGTCTTCCTGGAAGAATGTGGTGGTTTTCAATGCCAGTAGCAACCTCTTCAATGGAAGTATTCCACTGGAGCTAACATCTCTTCCCCACCTAACAACTCTTCTGCTTGATCAGAACCAGCTCAGTGGGCCACTTCCATCAGATATAACATCATGGAAGTCCCTAATAACTCTAAACCTGAGCCACAACCAACTCTCTGGAGAAATTCCAGATACAATTGGTCAGTTACCTTCCCTTAATATATTGGACTTGTCAGAAAACAAAATCTCTGGCCAAATTCCATCTCAACTAGCCATTATGAGGCTTACAAATCTCAATCTGTCTTCCAATCATTTTACAGGGAGGATTCCAAGTGAATTTGAAAACCTTGTATATGCCAGCAGTTTCTTGAACAATTCTGGTCTCTGTGCTAATACCCCTGTACTAAACCTTACCTTGTGCAATTCTGGCCCCAAAAGGGCAAGAAATGGCTCTTCTGTGTCTCATGCTATGATCATAAGCCTAGTGGTGGCATCCTCCTTACTGGCTTTCTTGTCATCACTCTTGATGATCACAATTTACAGAAAGAGAAAGCAAGAACTGAAGAAGTCATGGAAGCTCACTTCCTTTCAAAGGCTGAGTTTCACAAAATCAAACATTGTGTCATCAATGACAGAACATAATATCATTGGCAGTGGTGGATTTGGAGCAGTATACCGTGTTGCTATTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAGTAGCAGAAAATTAGAGGAGAAGCTTGTGAATTCATTTCTTGCAGAAGTGGAAATACTAAGCAACATTCGTCATAACAACATTGTAAAGTTGATGTGTTGTATCTCCAGTGAGGATTCTCTGCTCCTTGTCTATGAGTATCTGGAAAACCATAGCCTTGATAGGTGGCTGCACAAGAAAAGTAAGCAATCAGTTGCAGAATATGCTCAAACAACAAGAGTCAATGAGAAGATAGATGTCTATAGCTTTGGAGTAATCCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGATGAATACTCATCTCTTGCAGAATGGGCTTGGCGCCACATTCAGGTAGGAAGCAACATAGAAGATCTTCTAGATGATGAAATTGTGGAACCTAGTTACTCGGATGAAATGTGCAACATCTTCAAACTTGGAGTGATGTGCACTTCAACACTGCCAGCTAGTAGACCTTCCATGAAGGAGGTCTTGAAGATATTGCTCAACTGCAACGATCTACATGTCATTGGAGAGAAGAGTGTTGGTTTCTATGATGCTGTTCCACTTCTTAAGCATTCAAAATGGGAAAAGCAGGAGGAGTATGATGATGATAGCTTTGTAGGTGGCATCACAGTTTGA | 5370 | 0.4028 | MKSLTLSCLKLLFHHLVTFFLILSHVNSQSQPQLYDQEHEVLLKIKQYLDNPSFLNHWTQSNSSHCSWPEITCTNGSVTELTLVSTNIEQTIPPFICDLKNLTHVDFNDNFIPGEFPTYLYNCSKLEYLDLSMNNFVGKIPDDIDRLVNLQYLNLSYTNFSGDIPASIGRLKELRYLALQYCLFNGTFPDEIGNLSNLEILDLSSNNLFLPSRVPTNWTQLNKVKIFYLYDSNLVGEIPESIGEMVALEKLDISKNSLTGHIPEGLFTLKNLSILYLYRNSLSGEIPSVVEALNLTVIDFTRNHLTGKIPEDFGKLQKLTGLSLSMNNLSGEIPQGIDRFPSLIDFRVFMNNLSGTLPPDFGRYSKLGSFHIASNNFRGKLPENLCYHGELRNLTVYENHLTGELPESLGNCSSLLELKIYSNEFSGNIPSGLWNSNLLNFMVSNNKFTGELPERLSSSISRFEISNNQFYGRIPTGVSSWTNVVVFEASENYLNGSIPQGLTALPKLQTLLLDQNQLTGPLPSDIISWKSLVILDLSHNQLSGKIPDAIGRLPVLSELDLSENQLSGQIPSVFPRITNLNLSSNNLTGRIPSEFENSAFASSFLNNSGLCSDTPALNLTLCNSVPQSSSKDSSWSPALIIGLVVVVLIMALLASLLIIRLYRKRKQGLDKSWKLIAFQRLSFTESNIVSSLTEHNIIGNGGFGIVYRVPIDDLGYVAVKKIWENRKLDQNLESSFHAEVKILSNIRHRNIVKLLCCISNDDTMLLVYEYVENRSLDRWLHKKIKLSAVSEYVQTTRVSEKIDVYSFGVILLELTTGKEANNGDEHSSLAEWARRHYQIGSKIEELLDKEVTEPSYLDGMCKVFKLGVMCTATHPASRPSMKESQAVLYDQEHTVLLKIKNYLQNPSFLSHWTPSNSSHCSWPEITCTNGSVTALALINTNITQTLPPFLCDLTNLTYIDFQLNYLPGEFPTSLYNCSKLEHLDLSQNFFVGKIPDDINRLAKLRFLSLGANNFSGDIPGSIGGLKELRSLQLYQCPFNGTLPADIGNLSNLETLYMFSNSMLPPTKFPSSLIKLNKLRVFYMYDSNLVGEIPETIGEMVALEELDLSGNQLSGQIPNGLFTMKNLSILFLYNNSLSGEIPGVIEAYNLTMLDLSENDLTGKIPDDLGKLKKLTALALSMNQLSGEVPESIGLLPALTDFIVFLNNLSGTLPPDFGRFSMLETFQVASNSFTGSLPENLCYYGRFVGLTAYDNNLSGELPESLGSCSSLQYLRVENNEFSGNIPSGLWTSMNLSTIMISENKFTGELPERLSWNLSVLAISYNQFSGRIPHGVSSWKNVVVFNASSNLFNGSIPLELTSLPHLTTLLLDQNQLSGPLPSDITSWKSLITLNLSHNQLSGEIPDTIGQLPSLNILDLSENKISGQIPSQLAIMRLTNLNLSSNHFTGRIPSEFENLVYASSFLNNSGLCANTPVLNLTLCNSGPKRARNGSSVSHAMIISLVVASSLLAFLSSLLMITIYRKRKQELKKSWKLTSFQRLSFTKSNIVSSMTEHNIIGSGGFGAVYRVAIDGLGYVAVKKIWSSRKLEEKLVNSFLAEVEILSNIRHNNIVKLMCCISSEDSLLLVYEYLENHSLDRWLHKKSKQSVAEYAQTTRVNEKIDVYSFGVILLELTTGKEANHGDEYSSLAEWAWRHIQVGSNIEDLLDDEIVEPSYSDEMCNIFKLGVMCTSTLPASRPSMKEVLKILLNCNDLHVIGEKSVGFYDAVPLLKHSKWEKQEEYDDDSFVGGITV. | 1790 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g03220 | 1789 | Pfam | Leucine Rich repeats (2 copies) | 1385 | 1422 | IPR025875 | - | |
Seca10g03220 | 1789 | FunFam | Receptor-like protein kinase HSL1 isoform A | 889 | 1040 | - | - | |
Seca10g03220 | 1789 | Gene3D | Phosphorylase Kinase; domain 1 | 1525 | 1627 | - | - | |
Seca10g03220 | 1789 | ProSiteProfiles | Protein kinase domain profile. | 692 | 1015 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g03220 | 1789 | ProSiteProfiles | Protein kinase domain profile. | 1549 | 1789 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g03220 | 1789 | SUPERFAMILY | RNI-like | 292 | 597 | - | - | |
Seca10g03220 | 1789 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1555 | 1578 | IPR017441 | GO:0005524 | |
Seca10g03220 | 1789 | Pfam | Leucine Rich Repeat | 979 | 998 | IPR001611 | GO:0005515 | |
Seca10g03220 | 1789 | Pfam | Leucine Rich Repeat | 1102 | 1119 | IPR001611 | GO:0005515 | |
Seca10g03220 | 1789 | Pfam | Leucine Rich Repeat | 1433 | 1455 | IPR001611 | GO:0005515 | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 245 | 268 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 953 | 979 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 269 | 295 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 1099 | 1122 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 195 | 223 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 529 | 561 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 316 | 339 | - | - | |
Seca10g03220 | 1789 | SMART | LRR_sd22_2 | 99 | 131 | - | - | |
Seca10g03220 | 1789 | SUPERFAMILY | RNI-like | 1147 | 1456 | - | - | |
Seca10g03220 | 1789 | Pfam | Protein kinase domain | 1551 | 1644 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g03220 | 1789 | Pfam | Protein kinase domain | 694 | 787 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g03220 | 1789 | PRINTS | Leucine-rich repeat signature | 1102 | 1115 | - | - | |
Seca10g03220 | 1789 | PRINTS | Leucine-rich repeat signature | 1408 | 1421 | - | - | |
Seca10g03220 | 1789 | SUPERFAMILY | Protein kinase-like (PK-like) | 689 | 898 | IPR011009 | - | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 1003 | 1065 | IPR032675 | - | |
Seca10g03220 | 1789 | ProSiteProfiles | Leucine-rich repeat profile. | 1386 | 1408 | IPR001611 | GO:0005515 | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 891 | 1002 | IPR032675 | - | |
Seca10g03220 | 1789 | FunFam | Receptor-like protein kinase HSL1 isoform A | 35 | 186 | - | - | |
Seca10g03220 | 1789 | Pfam | Leucine rich repeat | 101 | 159 | IPR001611 | GO:0005515 | |
Seca10g03220 | 1789 | Pfam | Leucine rich repeat N-terminal domain | 37 | 73 | IPR013210 | - | |
Seca10g03220 | 1789 | Pfam | Leucine rich repeat N-terminal domain | 891 | 927 | IPR013210 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 245 | 269 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 1099 | 1123 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 505 | 529 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 1360 | 1384 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 553 | 576 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 195 | 221 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 316 | 340 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 1408 | 1432 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 1001 | 1025 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 1170 | 1194 | IPR003591 | - | |
Seca10g03220 | 1789 | SMART | LRR_typ_2 | 147 | 171 | IPR003591 | - | |
Seca10g03220 | 1789 | SUPERFAMILY | L domain-like | 44 | 378 | - | - | |
Seca10g03220 | 1789 | FunFam | Putative leucine-rich repeat receptor-like protein kinase family protein | 191 | 291 | - | - | |
Seca10g03220 | 1789 | SUPERFAMILY | L domain-like | 896 | 1236 | - | - | |
Seca10g03220 | 1789 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1630 | 1756 | - | - | |
Seca10g03220 | 1789 | ProSitePatterns | Protein kinases ATP-binding region signature. | 698 | 721 | IPR017441 | GO:0005524 | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 1066 | 1201 | IPR032675 | - | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 1202 | 1479 | IPR032675 | - | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 346 | 622 | IPR032675 | - | |
Seca10g03220 | 1789 | Gene3D | Transferase(Phosphotransferase) domain 1 | 784 | 890 | - | - | |
Seca10g03220 | 1789 | SUPERFAMILY | Protein kinase-like (PK-like) | 1547 | 1748 | IPR011009 | - | |
Seca10g03220 | 1789 | FunFam | Receptor-like protein kinase HSL1 isoform A | 1153 | 1479 | - | - | |
Seca10g03220 | 1789 | Gene3D | Phosphorylase Kinase; domain 1 | 664 | 770 | - | - | |
Seca10g03220 | 1789 | FunFam | Kinase family with leucine-rich repeat domain-containing protein | 674 | 770 | - | - | |
Seca10g03220 | 1789 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 1646 | 1744 | - | - | |
Seca10g03220 | 1789 | FunFam | Putative leucine-rich repeat receptor-like protein kinase family protein | 1045 | 1145 | - | - | |
Seca10g03220 | 1789 | FunFam | Receptor-like protein kinase HSL1 isoform A | 299 | 622 | - | - | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 35 | 211 | IPR032675 | - | |
Seca10g03220 | 1789 | Gene3D | Ribonuclease Inhibitor | 212 | 345 | IPR032675 | - | |
Seca10g03220 | 1789 | FunFam | Receptor-like protein kinase HSL1 | 1529 | 1627 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g03220 | Seca-Chr10 | 47054948 | 47063543 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g03220 | 33 | 891 | Receptor kinase-like Gene Family | AT5G25930 | 43.414 | 0.0 | 710 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca10g03220 | Pkinase | 2e-15 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g03220 | - | - | gmx:100785907 | 1187.17 |