Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03216 ATGGGGAGAGCCAAAAGGTGGCTGAAGGGCTTGTTTGGGATAAAAGAGAACAGAGAACACAAACAAAACTCAAACTTTGGAGACCCCAACAGCATGAAACATGTTTCTGCAGCTCATTCTGAGAGTAATTCCAAAATCTTGTGTCTCAATCCAGCCACTATACCACCCAACATTTCTCCAGCAGAAGCTGCTTGGTTACAATCTTTCTACACAGACAAAGAAAAGGAGCAGAACAAGCATGCCATTGCAGTTGCTGCAGCCACAGCTGCAGCAGCTGATGCTGCTGTGGCTGCTGCACAGGCTGCAGTGGCAGTGGTTAGGCTAACCAGCCATGGAAGAGGCACCATGTTTGGTAATGGACATGAGATGTGGGCTGCTATCAAGATTCAAACAGTGTTTAGAGGATACCTGGCAAGGAAGGCACTGAGAGCCTTAAAAGCATTGGTGAAGTTACAAGCACTTGTAAGAGGGTATTTGGTGAGGAAGCAAGCAACAGCAACATTGCATAGTATGCAGGCTCTTATTAGAGCTCAGGCTACAGTTAGGTCTCAGAAATCTCACAGGCTCATGAGCACAAAGAATGAAGCAAATAGATTTCATAACCAAGCAAGAAGATCCATGGAGAGATTTGATGACACTAGGAGTGAGTACACAGCTCCAATCCACAGTAGAAGGTTGTCATCTTCTTTTGATGCCACAATTAACAACAACAGTGTTAATGATGGAAGCCCCAAAATAGTTGAAATGGACACTGGGAGGCCTAAGTCAAGGTCTCGCAGGACCAACACCTCAATATCAGATTTTGGTGATGACCCTTCATTTCAGGCACTTTCTTCTTCCTTACCAATCCCTTGTAAAACACCTATTCGTTTGTCCATACCAGACCATAGGAATTTCCAGGACTCTGATTGGGGGTTAACAGGGGAAGAGTGTAGATTCTCTACAGCACAAAGCACTCCAAGGTTCACACATTCTTGTAGTTGTGGTTCAGTTGCACCTATGACACCAAAGAGTGTATGCAATGACAACTTATTCCTTAGGCAATATGGGAATTTTCCAAATTACATGGCTAGCACTCAGTCTTTTAAGGCCAAATTGAGGTCACATAGTGCTCCAAAGCAACGGCCAGAACCAGGTCCAAAGAGGAGGCTTTCACTCAATGAAATGATGGAGTCTAGGAATAGTTTAAGTGGGGTTAGAATGCAGAGGTCTTGTTCACAGGTTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGAGTAAGCTTCAGAAGTCCACAGAATCTGCCACTGCAAAGGAGACAGACAGAAGTTACTTCCACCAGAGGAGGTGGTAG 1335 0.4442 MGRAKRWLKGLFGIKENREHKQNSNFGDPNSMKHVSAAHSESNSKILCLNPATIPPNISPAEAAWLQSFYTDKEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGNGHEMWAAIKIQTVFRGYLARKALRALKALVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQKSHRLMSTKNEANRFHNQARRSMERFDDTRSEYTAPIHSRRLSSSFDATINNNSVNDGSPKIVEMDTGRPKSRSRRTNTSISDFGDDPSFQALSSSLPIPCKTPIRLSIPDHRNFQDSDWGLTGEECRFSTAQSTPRFTHSCSCGSVAPMTPKSVCNDNLFLRQYGNFPNYMASTQSFKAKLRSHSAPKQRPEPGPKRRLSLNEMMESRNSLSGVRMQRSCSQVQEVINFKNAVMSKLQKSTESATAKETDRSYFHQRRW. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03216 444 Gene3D - 121 173 - -
Seca10g03216 444 PANTHER IQ-DOMAIN 5-RELATED 1 391 - -
Seca10g03216 444 MobiDBLite consensus disorder prediction 423 444 - -
Seca10g03216 444 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Seca10g03216 444 SMART iq_5 144 165 IPR000048 GO:0005515
Seca10g03216 444 SMART iq_5 121 143 IPR000048 GO:0005515
Seca10g03216 444 Pfam IQ calmodulin-binding motif 124 143 IPR000048 GO:0005515
Seca10g03216 444 Pfam IQ calmodulin-binding motif 146 163 IPR000048 GO:0005515
Seca10g03216 444 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Seca10g03216 444 MobiDBLite consensus disorder prediction 428 444 - -
Seca10g03216 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 164 IPR027417 -
Seca10g03216 444 MobiDBLite consensus disorder prediction 235 271 - -
Seca10g03216 444 Pfam Protein of unknown function (DUF4005) 319 400 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03216 Seca-Chr10 46895043 46896621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03216 1 401 IQD Protein Family AT3G16490 52.567 7.72e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03216 - - aprc:113866809 684.871