Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03215 ATGTCAAACTTGTGTTACATTTTCTGCATGTTAGCAGTTCTTCTTCTTCTGCAAAATCCCACTAGAATACACTGCCATACTAAGGGAATTAGACCAAGACGTTCTGCTGGGAATGGTTTATTGACCAATATGTCAAGAGTAGAGTATTCAGAACAGCAATTCATGAAATGGGTCAATTTTGTTGGTAGCCTTAAACACACAGTTTTTAAGACTGCAAAAAATAAGCTCTTTGCTTCTTACACTTTGCACGTTGATAAGAATCCTGCTCTTGGTGATTTCACATCAATTCAAGAAGCCATTGATTCCCTTCCATCCATTAATCTTGTGAGAGTGATCATCAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAATATTCCAGCTTTGAAATCCTTCATAACAATAGAAGGAGCTGGTGCAGATAAAACCATTGTTCAATGGAATGACACTGCTCAAACACCTGGGCCAAGTGGGAGACCATTGGGAACCATTGGTTCAGCAACTTTTGCAGTGAATTCACTTTATTTCATTGCCAAGAACATAACATTTCAAAACACTACTCCTGTTCCTGCACCAGGAGCAATTGGAAAACAAGCAGTTGCATTCAGGATTTCAGCAGACACAGCAGCATTCTTGGGCTGCAAATTCTTAGGAGCACAGGACACACTGTATGATCATTTGGGCAGGCATTACTATAAGGATTGTTATATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCTCTCTCCCTTTATGAGGGATGTCACGTGCATGCCATAGCACAGAATACAGGGGCCTTAACAGCTCAAGGAAGAAGCAGTATGTTGGAAGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCTTTTTCTCGCGTGGTCTTCGCCTATACCTATATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTAGCATGGTCAAGAGAACTCACTGATGAGGAAGCTAGACCTTTTCTTTCACTTAGCTTTATTGATGGGACTGAATGGATCAAAATTTAG 1143 0.4208 MSNLCYIFCMLAVLLLLQNPTRIHCHTKGIRPRRSAGNGLLTNMSRVEYSEQQFMKWVNFVGSLKHTVFKTAKNKLFASYTLHVDKNPALGDFTSIQEAIDSLPSINLVRVIIKVHAGVYTEKVNIPALKSFITIEGAGADKTIVQWNDTAQTPGPSGRPLGTIGSATFAVNSLYFIAKNITFQNTTPVPAPGAIGKQAVAFRISADTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIAQNTGALTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVAWSRELTDEEARPFLSLSFIDGTEWIKI. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03215 380 Pfam Pectinesterase 91 374 IPR000070 GO:0030599|GO:0042545
Seca10g03215 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 379 - -
Seca10g03215 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Seca10g03215 380 Gene3D - 77 380 IPR012334 -
Seca10g03215 380 SUPERFAMILY Pectin lyase-like 78 379 IPR011050 -
Seca10g03215 380 FunFam Pectinesterase 78 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03215 Seca-Chr10 46878714 46882126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03215 93 378 Carbohydrate Esterase AT5G47500 50.871 2.70e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03215 K01051 - gmx:100793314 702.975