Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03208 ATGATTTGGAAAATGATTTTTGCTGCGGGAAACGTGATTTCTCGCTCCTCGACAAGCCAAACAAGATTGAAATTTTGGAATAATAATATAACGACAAATAATGCATTCAGTGAGAGAGACTTTCATCGTAAGCAAGCGCTAGCGAAGTGGCAGAGTGAAGTGCGAGTGTGGAGTGTGCATCACCTAACCATTACTCATCAAACCAAAATCAAAATCAAAATCAAAACCCAAACCCTACCCCTCTTTCTCTGTTTCAATCACTGTACTCCAATGAGTCTCGAGCCACCCCTCAATCCCCCTTCCACCGTCGAAATCATCGACGTCGAATCCTTTCGCTTCACCCGCAACAGAGACACCCACGTCATCGACGTCGATCACTACCACAGCCACGTCATCAACCTTTCCGATGTCGAAGACGACGACGACGACGTTAGAGTCCTCAATTTCATACCCCTAAACACCACTTTCGGTAACAGACGAAGAAGAAGAAGCATAAACGACACCAACGACCACTGCGTTGAGAAAGGAGAGTCTTCGAACAGCACGCCCTTCTTCTGCGAGATTTGCGCGGACACCAAAACGGCGAAAGACGCCTTCAGCATCAGCGGCTGCTCCCACGCGTATTGCTCTGAGTGCGTCGCCATGTACGTGGGTGCCAAGCTTCAAGAAAACGTGATCAACATTCGGTGCCCCGTTTCGGGATGCAGTGGTTTGTTAGAGGCGGAGTATTGCCGTGCGATTCTTCCGCCGGAGGTGTTCGATCGGTGGGGGAAGGCGTCGTGTGAGGCCGTGATTTCTGCTTCGGAGAAATTCTATTGTCCCTTCGCCGATTGCTCTGCGCTGTTGATTGATGATGGAACAGAGACAGTTAGGGAATCAGAGTGCCCTAATTGTGGGAGGTTGTTCTGCGCGCAGTGTAAGGTTCCTTGGCATATGGGGATAGAGTGCGATGAGTTTCAGAAGCTGAATGAGGACGAGAGGGGGAAGGACGATGTCATGTTGATGCATCTTGCTAAGGAGATGAAGTGGATGAGGTGCCTCAATTGCAGGTTTTACGTTGCCAAATCTGAGGGTTGCATGTACATGAAATGCAGGGTGTGGATATGCCTTCTGTTACAACTGTGGAACTGCTAA 1134 0.4912 MIWKMIFAAGNVISRSSTSQTRLKFWNNNITTNNAFSERDFHRKQALAKWQSEVRVWSVHHLTITHQTKIKIKIKTQTLPLFLCFNHCTPMSLEPPLNPPSTVEIIDVESFRFTRNRDTHVIDVDHYHSHVINLSDVEDDDDDVRVLNFIPLNTTFGNRRRRRSINDTNDHCVEKGESSNSTPFFCEICADTKTAKDAFSISGCSHAYCSECVAMYVGAKLQENVINIRCPVSGCSGLLEAEYCRAILPPEVFDRWGKASCEAVISASEKFYCPFADCSALLIDDGTETVRESECPNCGRLFCAQCKVPWHMGIECDEFQKLNEDERGKDDVMLMHLAKEMKWMRCLNCRFYVAKSEGCMYMKCRVWICLLLQLWNC. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03208 377 CDD BRcat_RBR_unk 267 319 - -
Seca10g03208 377 ProSiteProfiles Zinc finger RING-type profile. 186 232 IPR001841 -
Seca10g03208 377 SUPERFAMILY RING/U-box 181 265 - -
Seca10g03208 377 Pfam IBR domain, a half RING-finger domain 260 316 IPR002867 GO:0008270
Seca10g03208 377 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Seca10g03208 377 SMART ibrneu5 254 316 IPR002867 GO:0008270
Seca10g03208 377 FunFam RBR-type E3 ubiquitin transferase 181 267 - -
Seca10g03208 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 269 IPR013083 -
Seca10g03208 377 SUPERFAMILY RING/U-box 262 321 - -
Seca10g03208 377 Gene3D - 313 377 - -
Seca10g03208 377 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 109 370 IPR031127 GO:0004842|GO:0016567
Seca10g03208 377 ProSiteProfiles TRIAD supradomain profile. 182 377 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03208 Seca-Chr10 46677857 46680474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03208 186 365 C3H Transcription Factor Family AT2G19610 30.688 9.78e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03208 K11975 - gmx:100803898 337.035