Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03199 ATGAAGACCAAGACACCATTGAAGCAGCTGAAGCTAGCGGTTCCTGCTCAAGAAACACCCATTACATCCTTCCTGACTGCAAGTGGAACATTCCATGATGGAGATCTGCTCTTGAACCAGAAAGGGTTGCGTCTCATCTCAGAAGAAAAGGAATCAAGGCCTTCAGATGGTCAGGAGCTTGAATTTGACTTCTCACTGGACGACCTTGAGACCATCAAAGTAATTGGAAAAGGCAGTGGTGGTGTAGTACAACTTGTTCGTCATAAGTGGGTTGGGAAATTGTTTGCTCTAAAGGTCATTCAGATGAATATACAAGAGGATATACGAAAACAGATTGTTCAAGAATTGAAAATAAACCAAGCGTCCCAATGTCCACATGTTGTAGTTTGCTACCACTCATTTTATCATAATGGAGTTATATCTCTTGTATTAGAATACATGGACCGTGGTTCTCTAGCAGATATAATCAGACAAGTTAAAACCATTTTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTATTACAAGGCCTTGTCTACTTGCATAATGAAAGACATGTAATACACAGGGACATCAAGCCATCCAATCTACTAGTTAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCCAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTATAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGACTATAGTAGTGACATATGGAGTTTGGGCATGGTAGTGCTTGAGTGTGCCATAGGACGGTTCCCTTATATACAATCTGAAGATCAGCAAGCCTGGCCTAGTTTCTATGAGCTTTTGGCAGCAATTGTGGAAAGCCCCCCACCTTCTGCTCCACCAGATCAGTTCTCCCCGGAGTTCTGTTCATTTGTGTCATCCTGTTCTGCAGTTTCAAAACCTAATGTTTGTGCCTTTGGTAATGGTACCTCAGTACCTTCTGTTTCACTTCTGTTAGCTCGTCTTTTGTTGTGGTTATTGTTTGACCCATTTGCTGGTTGTATCATCCAGAAGGATCCTCGAGATAGATTGACATCCTTGGAGCTTCTGGGCCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGGTAGGCAGCTTGGAACCTCCTGTAAATTTTCCCAGATAA 1185 0.4177 MKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGQELEFDFSLDDLETIKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADIIRQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLAAIVESPPPSAPPDQFSPEFCSFVSSCSAVSKPNVCAFGNGTSVPSVSLLLARLLLWLLFDPFAGCIIQKDPRDRLTSLELLGHPFIKKFEDKDLDLGILVGSLEPPVNFPR. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03199 394 Pfam Protein kinase domain 70 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03199 394 Gene3D Transferase(Phosphotransferase) domain 1 150 383 - -
Seca10g03199 394 ProSiteProfiles Protein kinase domain profile. 69 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03199 394 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Seca10g03199 394 Gene3D Phosphorylase Kinase; domain 1 39 148 - -
Seca10g03199 394 FunFam mitogen-activated protein kinase kinase 3 149 317 - -
Seca10g03199 394 SMART serkin_6 69 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03199 394 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 16 371 - -
Seca10g03199 394 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Seca10g03199 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Seca10g03199 394 CDD PKc_MAPKK_plant_like 67 373 - -
Seca10g03199 394 SUPERFAMILY Protein kinase-like (PK-like) 66 382 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03199 Seca-Chr10 46532176 46535675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03199 1 394 MAP Kinase Kinase Gene Family AT5G56580 77.215 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca10g03199 Pkinase 9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03199 K04368 - gmx:100786284 653.669