Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03196 ATGTCGTGGCAAACTTACGTAGATGATCACTTGATGTGCGATATCGATGGCACAGGGCAACACCTCTCCGCCGCCGCCATCGTCGGCCACGACGGTTCCATCTGGGCTCAGAGCTCTTCCTTCCCTCAGTTTAAGGCTGATGAGATCACTGGTATCATGAAAGATTTTGACGAACCAGGCTATCTTGCTCCTACTGGCTTGCACCTTGGTGGCACCAAATACATGGTAATCCAGGGAGAGCCAGGAGCTGTCATCCGTGGGAAGAAGCAGGGATCTGGAGGTATCACCATAAAGAAAACCGGCCAAGCTCTAGTTTTTGGCATCTATGAGGAACCTGTTACTCCTGGACAGTGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTTGTTGATCAGGGTCTGTAG 405 0.5086 MSWQTYVDDHLMCDIDGTGQHLSAAAIVGHDGSIWAQSSSFPQFKADEITGIMKDFDEPGYLAPTGLHLGGTKYMVIQGEPGAVIRGKKQGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03196 134 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Seca10g03196 134 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Seca10g03196 134 Gene3D Dynein light chain 2a, cytoplasmic 1 134 - -
Seca10g03196 134 FunFam Profilin 1 134 - -
Seca10g03196 134 SUPERFAMILY Profilin (actin-binding protein) 2 133 IPR036140 -
Seca10g03196 134 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Profilin signature 116 133 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Profilin signature 103 116 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Plant profilin signature 120 133 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Plant profilin signature 87 102 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Plant profilin signature 107 120 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Seca10g03196 134 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Seca10g03196 134 Pfam Profilin 1 133 IPR005455 GO:0003779
Seca10g03196 134 SMART prof_2 1 134 IPR005455 GO:0003779
Seca10g03196 134 CDD PROF 2 133 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03196 Seca-Chr10 46468921 46471985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03196 1 134 Cytoskeleton Gene Families AT4G29340 81.481 1.65e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03196 K05759 - csv:101219322 263.848