Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03192 ATGTATAAAGTGGAGAAGGGCTGGATTCTGGCCTTTGTCCTCCTCATTCTCCATTTAAGTACAACAAAAGCTGCCTTTAGTGTTAGCGGTGGTGTTGGTGTAGGTGTTGGTGTTGGAAGTGGTGGAGGTGGCGGTGGCGGCGGTGGAGTGGTTTGGGTTGGGGGAGGGATTAACAGCCCAAAGCCCCCTGGATCATCAGTGCCAAAGCTGAATGCAGCTTACACAGCTCTCCAGGCGTGGAAATCTGCAATTACTGACGACCCATTAAAGATTTTAGATAGTTGGGTTGGTCCTAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGGTTCATCAGCTGTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTCCAAGGAACTCTTGTCAAAGATCTCTCTTTGCTCACTGATATGTCTCTTCTCCACCTTAACAGCAATAGATTCACTGGCACTGTTCCTGATACATTCAGGGACCTCATGTCTTTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTTCCTGCTGTTATTTTCTACATGCCAAGCCTCATCTACTTAGACCTCAGATTCAACTTATTCTCAGGTCCCCTCCCTCAAGAACTTTTCAATAAGAACCTGGATGCAATATTTGTCAACAACAATCAATTTGAAGGTGAAATTCCCCAAAATTTGGGCAATTCCCCTGCCTCGGTGATAAATTTAGCCAACAACAAGTTAAGTGGAAACATCCCAGCAAGTTTTGGTTTCATGGGTTCTAAGATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGTTGCATTCCTGAAGGAGTGGGGCTCTTCACAGAGATGCAAGTGCTGGATGTGAGCTTCAATGCACTTATGGGTCATTTGCCAGACACACTATCTTGCCTGCAAGATATAGAAGTCCTGAATTTGGCACATAATCAGCTTTCTGGGGAGTTATCAGACATAATCTGCTCTCTGAGAAGCCTTGCTAATCTAACCGTTTCGTACAATTTCTTTTCTGGGTTCAGCCAGCAATGTTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCACTTAACTGCATTCCTGGGAGGAACATGCAGAGACCTCAACCTGAGTGCTCTATGATCCCTGGAGGTAGCTTAAGTTGTCTCAGAATCCCTACACCAAAGCCTCTTGTTTGTGGTTCGCTGGCTGTAAGTACCTCTAAGCAAACAGATTCCACTTCACAATCTCCTTGA 1272 0.4458 MYKVEKGWILAFVLLILHLSTTKAAFSVSGGVGVGVGVGSGGGGGGGGGVVWVGGGINSPKPPGSSVPKLNAAYTALQAWKSAITDDPLKILDSWVGPNVCSYKGVFCANPQDEMGSSAVPVVAGIDLNHANLQGTLVKDLSLLTDMSLLHLNSNRFTGTVPDTFRDLMSLEELDLSNNQLSGPFPAVIFYMPSLIYLDLRFNLFSGPLPQELFNKNLDAIFVNNNQFEGEIPQNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNALMGHLPDTLSCLQDIEVLNLAHNQLSGELSDIICSLRSLANLTVSYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRNMQRPQPECSMIPGGSLSCLRIPTPKPLVCGSLAVSTSKQTDSTSQSP. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03192 423 Pfam Leucine rich repeat 149 204 IPR001611 GO:0005515
Seca10g03192 423 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 60 411 - -
Seca10g03192 423 Gene3D Ribonuclease Inhibitor 71 238 IPR032675 -
Seca10g03192 423 PRINTS Leucine-rich repeat signature 171 184 - -
Seca10g03192 423 PRINTS Leucine-rich repeat signature 311 324 - -
Seca10g03192 423 SUPERFAMILY L domain-like 74 357 - -
Seca10g03192 423 Gene3D Ribonuclease Inhibitor 239 362 IPR032675 -
Seca10g03192 423 Pfam Leucine rich repeat N-terminal domain 71 108 IPR013210 -
Seca10g03192 423 FunFam Leucine-rich repeat extensin-like protein 1 74 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03192 Seca-Chr10 46373492 46374939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03192 68 396 Leucine-rich Repeat extension Gene Families AT3G24480 50.149 2.58e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03192 - - gsj:114407518 679.863