Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03188 ATGAGCAACTTGAGTTCTGTAAGCAGCTCTGATCTGATAGATGCAAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGCAAGCCGGACTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTAATAGAACATCTTGAAGCTAAAGTGGAGGCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGCTTAAGCAGGCACTTCTTCCACAGGCCATCAAAGGCTTATACAACTGGGACAAGAAAGAGAAGAAAGATTCAAAATGAATGTGACTTGCAAGGAGGAGAAACCAGATGGCACAAAACAGGTAAGACCAGGCCAGTGATGGTGAATGGGAAACAAAAAGGCTGCAAGAAAATTCTAGTCCTCTACACCAACTTTGGGAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCATCAGTACCATCTTGGTCAGCATGAAGAGGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAATGCAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGATCAGCCTAATAACAGTAGAAGGGACAGTGGAAGTGGAAGCTGTTCTTCAAAGGAAATAGTACCTCACAGAGATGAAATGTCTGCTGTTGTTGGAGTCCCTCCTATAACAAGCTTCACTCATGCTTTGGATATTCAACACCTAAAATCAGACCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCCACAGCAAGAGAAGTGCAAGCAGCTGGATCATGTGAAGAAGTACATGAACGGCAGAGAACACAACATGTAACTCATCATCATCATCAACAACAACATCACCATCAGATTGCAAACTCAGCTTTTCATATAAGTAGGCCTTCACATCCCATCTCTACCATTATCTCTCCGCCTCCTCTCCATCAAACATCCATCATCCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTCCAGGTAATTAATAATCCCCATCGGCAGCAACAACATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATAATGGGTTGCACTTCAACTGATATCAAAGAGGAGTCATCGATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAATCCGGATCATCATGGATAG 1338 0.4357 MSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGDQPNNSRRDSGSGSCSSKEIVPHRDEMSAVVGVPPITSFTHALDIQHLKSDHFSFIPFRKSFDEVGIGEASTAREVQAAGSCEEVHERQRTQHVTHHHHQQQHHHQIANSAFHISRPSHPISTIISPPPLHQTSIILDDNSYHVSRIMLQNENFQVINNPHRQQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03188 445 FunFam NAC domain-containing protein 73 53 209 - -
Seca10g03188 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 329 IPR044799 GO:0003700
Seca10g03188 445 ProSiteProfiles NAC domain profile. 44 205 IPR003441 GO:0003677|GO:0006355
Seca10g03188 445 MobiDBLite consensus disorder prediction 212 242 - -
Seca10g03188 445 SUPERFAMILY NAC domain 40 205 IPR036093 GO:0003677|GO:0006355
Seca10g03188 445 MobiDBLite consensus disorder prediction 212 248 - -
Seca10g03188 445 Pfam No apical meristem (NAM) protein 45 186 IPR003441 GO:0003677|GO:0006355
Seca10g03188 445 Gene3D NAC domain 53 209 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03188 Seca-Chr10 46293984 46298357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03188 8 442 NAC Transcription Factor Family AT5G56620 53.632 3.26e-140 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g03188 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03188 - - gmx:100795246 781.556