Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03181 ATGATGCTCGGAGAGCACCATCGCGCTAATCCAACGATCCATGTGCCTCCATGGCCAGTCCATGATGATCCAACGGTGGAGATGTATTCCCCGTGCTATGCAAACGACGGAGGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTGCAAGAAGCGCTGGCGGCGCTGCAACATTACTTGCCATCGAACGAGACGGACGGTGGCGACTCCGACTCGGGTCGCGATTCGGATGCTCCGGTTGACGCTTATTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGCGGAGGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTATTCCGGCACGGCGTGCCCTGATTTTCGCAAGGGGAATTGCAAGAAAGGTGACGCATGCGAGTTCGCGCATGGCGTTTTTGAGTGCTGGCTCCATCCTGCTCGCTACAGGACTCAGCCTTGTAAGGATGGTACCAGTTGCCGGCGGCGAGTGTGCTTCTTTGCTCACACGCCGGAACAGCTACGCCTTGTGCCGCAGCAGAGCCCCCGGAGCGCTAACTCGGCTGATTCTTATGATGGTTCTCCTCTGAGACAGGTTTCCATGCCATTTATGTCTTCTCCGGCGTCTGTTTCTCCGCCGGTGAGTCCTCCGGCGGATTCTCCGCCCATGTCGCCGATGACGCAGTCGCTGAGCCGGTCCCTGGGTTCAAGCTCCATCAATGAGATGGTGGCTTCTCTGCGGAATTTGCAGTTAGGGAAAGTGAAATCGTTTCCCTCTAACAGAAACATTTCAATGGGGTCTCCTGGATTCGGGTCCCCAAGAGGATCCGTGCTCCGACCCGGGTTTTGTAGCCTTCCCACTACGCCAACTCAGGCACCGACTCGTTCTGGTGTTAGTTACTTTGATCTTTGGGAGCAGAGCTGTGAAGAGGAACCAGTGATGGAGAGGGTGGAGTCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAGTTGAGCAAAGAGAACTCTCTGGATAGGTCGGGTTCGGGTCCTTCGGGTGGAGCCCCGGATGTTGGATGGGTTTCTGAGCTGGTGATGTGA 1125 0.568 MMLGEHHRANPTIHVPPWPVHDDPTVEMYSPCYANDGGNAGAGDYSPYYLQEALAALQHYLPSNETDGGDSDSGRDSDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSANSADSYDGSPLRQVSMPFMSSPASVSPPVSPPADSPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSFPSNRNISMGSPGFGSPRGSVLRPGFCSLPTTPTQAPTRSGVSYFDLWEQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGSGPSGGAPDVGWVSELVM. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03181 374 PANTHER UNKEMPT FAMILY MEMBER 52 373 IPR045234 -
Seca10g03181 374 SMART c3hfinal6 163 186 IPR000571 GO:0046872
Seca10g03181 374 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Seca10g03181 374 ProSiteProfiles Zinc finger C3H1-type profile. 129 155 IPR000571 GO:0046872
Seca10g03181 374 MobiDBLite consensus disorder prediction 191 247 - -
Seca10g03181 374 MobiDBLite consensus disorder prediction 224 238 - -
Seca10g03181 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 153 IPR000571 GO:0046872
Seca10g03181 374 Gene3D - 129 191 - -
Seca10g03181 374 MobiDBLite consensus disorder prediction 191 223 - -
Seca10g03181 374 FunFam Zinc finger CCCH domain-containing protein 66 86 154 - -
Seca10g03181 374 MobiDBLite consensus disorder prediction 348 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03181 Seca-Chr10 46060375 46061499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03181 78 278 C2H2 Transcription Factor Family AT5G12850 51.869 4.91e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca10g03181 zf-CCCH 3.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03181 - - aprc:113867365 649.432