Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g03181 | ATGATGCTCGGAGAGCACCATCGCGCTAATCCAACGATCCATGTGCCTCCATGGCCAGTCCATGATGATCCAACGGTGGAGATGTATTCCCCGTGCTATGCAAACGACGGAGGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTGCAAGAAGCGCTGGCGGCGCTGCAACATTACTTGCCATCGAACGAGACGGACGGTGGCGACTCCGACTCGGGTCGCGATTCGGATGCTCCGGTTGACGCTTATTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGCGGAGGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTATTCCGGCACGGCGTGCCCTGATTTTCGCAAGGGGAATTGCAAGAAAGGTGACGCATGCGAGTTCGCGCATGGCGTTTTTGAGTGCTGGCTCCATCCTGCTCGCTACAGGACTCAGCCTTGTAAGGATGGTACCAGTTGCCGGCGGCGAGTGTGCTTCTTTGCTCACACGCCGGAACAGCTACGCCTTGTGCCGCAGCAGAGCCCCCGGAGCGCTAACTCGGCTGATTCTTATGATGGTTCTCCTCTGAGACAGGTTTCCATGCCATTTATGTCTTCTCCGGCGTCTGTTTCTCCGCCGGTGAGTCCTCCGGCGGATTCTCCGCCCATGTCGCCGATGACGCAGTCGCTGAGCCGGTCCCTGGGTTCAAGCTCCATCAATGAGATGGTGGCTTCTCTGCGGAATTTGCAGTTAGGGAAAGTGAAATCGTTTCCCTCTAACAGAAACATTTCAATGGGGTCTCCTGGATTCGGGTCCCCAAGAGGATCCGTGCTCCGACCCGGGTTTTGTAGCCTTCCCACTACGCCAACTCAGGCACCGACTCGTTCTGGTGTTAGTTACTTTGATCTTTGGGAGCAGAGCTGTGAAGAGGAACCAGTGATGGAGAGGGTGGAGTCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAGTTGAGCAAAGAGAACTCTCTGGATAGGTCGGGTTCGGGTCCTTCGGGTGGAGCCCCGGATGTTGGATGGGTTTCTGAGCTGGTGATGTGA | 1125 | 0.568 | MMLGEHHRANPTIHVPPWPVHDDPTVEMYSPCYANDGGNAGAGDYSPYYLQEALAALQHYLPSNETDGGDSDSGRDSDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSANSADSYDGSPLRQVSMPFMSSPASVSPPVSPPADSPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSFPSNRNISMGSPGFGSPRGSVLRPGFCSLPTTPTQAPTRSGVSYFDLWEQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGSGPSGGAPDVGWVSELVM. | 375 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g03181 | 374 | PANTHER | UNKEMPT FAMILY MEMBER | 52 | 373 | IPR045234 | - | |
Seca10g03181 | 374 | SMART | c3hfinal6 | 163 | 186 | IPR000571 | GO:0046872 | |
Seca10g03181 | 374 | SMART | c3hfinal6 | 128 | 154 | IPR000571 | GO:0046872 | |
Seca10g03181 | 374 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 155 | IPR000571 | GO:0046872 | |
Seca10g03181 | 374 | MobiDBLite | consensus disorder prediction | 191 | 247 | - | - | |
Seca10g03181 | 374 | MobiDBLite | consensus disorder prediction | 224 | 238 | - | - | |
Seca10g03181 | 374 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 133 | 153 | IPR000571 | GO:0046872 | |
Seca10g03181 | 374 | Gene3D | - | 129 | 191 | - | - | |
Seca10g03181 | 374 | MobiDBLite | consensus disorder prediction | 191 | 223 | - | - | |
Seca10g03181 | 374 | FunFam | Zinc finger CCCH domain-containing protein 66 | 86 | 154 | - | - | |
Seca10g03181 | 374 | MobiDBLite | consensus disorder prediction | 348 | 374 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g03181 | Seca-Chr10 | 46060375 | 46061499 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g03181 | 78 | 278 | C2H2 Transcription Factor Family | AT5G12850 | 51.869 | 4.91e-58 | 198 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca10g03181 | zf-CCCH | 3.7e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g03181 | - | - | aprc:113867365 | 649.432 |