LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03178	ATGGCAAGTTCAATTGGATTCATGCTGTTGTTGATGCTTTGTGTTGGTCTTACAGTTTCAGTTCATGCACAGCGACAAACAGGCTTCATAAGTATTGATTGTGGTGGTCCAGAGAATTTTGAGTACACAGATGATACCACTGAAATAAAGTACAGCACAGATGGAGCATACATACAAACAGGGGTTAACAAGAACATTTCCTCTGAGTATGCATACCCAAAGAATTCCAATCTGCCATTACCACTGTCTGATCTCAGAAGTTTTCCTCAGGGAATGAGGAACTGTTACAGGTTACTAGCTGGAAGAAAAGGCAGTTTACATTTAATAAGGGCTTCATTCTTATATGGAAACTATGATGGAAAAAACAAACTTCCAGAATTTGATCTCTATGTTGGTGTCAATTTCTGGTCATCAGTGAAATTTAGAAATGCTTCGGAGGAAGTTACAATGGAAATAATCAGCAGGGCACAATCAGAGGTGACAAATGTTTGTCTTGTGAACAAGGGAGCAGGAACTCCTTTTATCTCAGCATTGGAACTTAGACCACTTAATAGTTCTATTTATAATACTGAGTTTGGGGAATCTGCTTCACTTTTACTTTTTAAACGATGGGACATTGCAGCACTCAATTTATCTGGGAGATATGAAGATGATATTTATGATAGAATTTGGACTCCATACAATTCCTCTTCCTGGGATTCTATCAGCAATTCCTCAACAATAAACGTCGATGGTGATGGCTATAAAGCACCAATTGAAGTCATCAGCAGTGCTGCTAGACCAAGGAATAACAGTGGTACTTTGGAATTTTCCTGGACCCCAGATGATCCAAATTGGAAATTTTATGTCTACATGTACTTTGCTGAAGTGGAGCGACTTCAGAAAACCCAACTGAGGAAATTCAATATATCCTGGAATGGATCTCCATTGATCGAATCATTTGTACCACGCTACTCGTATGCAACCACTCTTTCTAACTCAAAATCCTTGGTTGCAAATGAACATCGAATTTCTATACACAAAACAAAAGATTCAACTCTTCCACCCATTCTCAATGCAGTTGAGATTTTTGTAGTAAGACAGCTGGATGCACTTCCAACATTTGGGCATGATGTTGATGCCATGATGGACATAAAAGATAGTTACAAAGTTGAAAGAAATTGGGTGGGTGATCCATGTGAGCCAAAGAACTACACTTGGGAGGGCTTAAATTGCAACTACAGCACTTCATTTCCTCCTCGAATAATATCACTGAATCTAAGCTCAAGCAGTCTGAGTGGAATAATAACTCCTGCCATTTCCAATCTATCTTCGTTGGAATCTTTGGATTTAAGTGACAATAGCTTAACTGGACCAGTGCCTCAGTTTTTGGAAGCATTGATATCCCTTAAATATTTGAATTTACAGGGAAACCAACTTTCAGGTTATGTCTCAGACACTCTTCTAGAAAGATCAAAGGCTGGATTACTTACACTGAGGGTGGATGACCAAAATCTGTGTGACTCAGATACAAGTAACAAAACGAAAATTGTTGTTCCCATAGTCGTGCCAGTATCATCAGTCTTAGTTATTTTGTTTATTTTTGTTCTCTTTTGGAAGCGGAGAAGAAATGAGAAATCAGATGAAGAGATGAGTAGTAAGATAAACAAAGTAAGAACTGTATCATCAAAGAACTGGCAATACACGTATGCTGAAGTGTTGGACATCACCAGCAACTTTGAAATGGTCATTGGGAAGGGAGGATTTGGAACTGTGTATCGCGGTCACATGAATGATGGCAATGAAGTTGCAGTTAAGATGCTTTCTCCATCATCAGCTCAGGGGCCAAAGGAATTTCAGACTGAGGCCGAGCTCTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCATTGGTTATTGTGATGAAGATAACAAGATGGCACTCATATATGAGTACATGGCCAATGGCAACCTGAAAAATTATCTCTCAGTTGCAGATAAAAAGTCACATTGTTTGAGTTGGGAAAGGAGAATTCAGATAGCAATCGATGCCGCAGAGGGATTGGATTACCTACACCATGGATGCAAGCCACCTATAATACATAGGGATGTGAAGTCAGCTAACATTCTTTTAAGTCAAGACTTAGAAGCTAAGATAGCGGATTTTGGCCTTTCCAAGGCGTTTAAGAATGACAACCAAAATGCAGAATCAGCGGTGATTCATGATGATGATAAAAAGCCAAAATCTACATTCATGGGCACAACAGGGTACCTTGACCCAGAGTACTACAAATTACGGAACTTGAATGAGAAAAGTGACATCTACAGCTTTGGAATTGTTCTATTGGAATTAATCACTGGTCGCCCTGCAGTATTAAAAGGCAATCCATCAATCCACATACTTGAGTGGTTAAGACCTGAGCTTGAAAGAGGGGACTTGAATAGAATTTTAGATCCAATGCTTGAAGGCCAATTTGATGGACGTTCTGGATGGAAAGCTTTAGGAATAGCAATGTCATGCACTGCATCACCCTCCATTCAGAGACCTACAATGAGTGTTGTGTTAGCAGAGCTAAAACAGTGTTTTAAAATGGAGTCGCCTAGTGATAGGGAAATATTTGTGGCCCCAAAACAATTCTACAGCGAATTTTGTAGTTCATCTGAAGCATATTCCATGGATAGTGAATCTATCACCTATCCTTATCCAAGGTAG	2694	0.3927	MASSIGFMLLLMLCVGLTVSVHAQRQTGFISIDCGGPENFEYTDDTTEIKYSTDGAYIQTGVNKNISSEYAYPKNSNLPLPLSDLRSFPQGMRNCYRLLAGRKGSLHLIRASFLYGNYDGKNKLPEFDLYVGVNFWSSVKFRNASEEVTMEIISRAQSEVTNVCLVNKGAGTPFISALELRPLNSSIYNTEFGESASLLLFKRWDIAALNLSGRYEDDIYDRIWTPYNSSSWDSISNSSTINVDGDGYKAPIEVISSAARPRNNSGTLEFSWTPDDPNWKFYVYMYFAEVERLQKTQLRKFNISWNGSPLIESFVPRYSYATTLSNSKSLVANEHRISIHKTKDSTLPPILNAVEIFVVRQLDALPTFGHDVDAMMDIKDSYKVERNWVGDPCEPKNYTWEGLNCNYSTSFPPRIISLNLSSSSLSGIITPAISNLSSLESLDLSDNSLTGPVPQFLEALISLKYLNLQGNQLSGYVSDTLLERSKAGLLTLRVDDQNLCDSDTSNKTKIVVPIVVPVSSVLVILFIFVLFWKRRRNEKSDEEMSSKINKVRTVSSKNWQYTYAEVLDITSNFEMVIGKGGFGTVYRGHMNDGNEVAVKMLSPSSAQGPKEFQTEAELLMTVHHKNLVSFIGYCDEDNKMALIYEYMANGNLKNYLSVADKKSHCLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSQDLEAKIADFGLSKAFKNDNQNAESAVIHDDDKKPKSTFMGTTGYLDPEYYKLRNLNEKSDIYSFGIVLLELITGRPAVLKGNPSIHILEWLRPELERGDLNRILDPMLEGQFDGRSGWKALGIAMSCTASPSIQRPTMSVVLAELKQCFKMESPSDREIFVAPKQFYSEFCSSSEAYSMDSESITYPYPR.	898

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03178	897	CDD	STKc_IRAK	577	854	-	-
	Seca10g03178	897	FunFam	Leucine-rich repeat receptor-like kinase	370	501	-	-
	Seca10g03178	897	SUPERFAMILY	Protein kinase-like (PK-like)	553	852	IPR011009	-
	Seca10g03178	897	Gene3D	Ribonuclease Inhibitor	371	487	IPR032675	-
	Seca10g03178	897	ProSiteProfiles	Protein kinase domain profile.	571	840	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03178	897	SMART	serkin_6	571	856	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03178	897	Gene3D	-	206	359	-	-
	Seca10g03178	897	FunFam	Leucine-rich repeat receptor-like protein kinase	549	646	-	-
	Seca10g03178	897	Pfam	Malectin-like domain	32	358	IPR024788	-
	Seca10g03178	897	FunFam	Os07g0541700 protein	647	735	-	-
	Seca10g03178	897	Gene3D	Phosphorylase Kinase; domain 1	577	647	-	-
	Seca10g03178	897	Pfam	Leucine rich repeat	417	473	IPR001611	GO:0005515
	Seca10g03178	897	SUPERFAMILY	L domain-like	387	482	-	-
	Seca10g03178	897	ProSitePatterns	Protein kinases ATP-binding region signature.	577	599	IPR017441	GO:0005524
	Seca10g03178	897	Gene3D	Transferase(Phosphotransferase) domain 1	648	870	-	-
	Seca10g03178	897	PANTHER	OS07G0107800 PROTEIN-RELATED	30	856	-	-
	Seca10g03178	897	Pfam	Protein kinase domain	574	786	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03178	897	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	693	705	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03178	Seca-Chr10	45968159	45974015	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g03178	8	859	Receptor kinase-like Gene Family	AT4G29180	51.602	0.0	863

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Seca10g03178		Malectin_like	2.5e-108	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03178	-		-	gmx:100793137	1363.59