Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03149 ATGGTGACGGCGGTCACCACCAGGTTGAAGAGGGAGCAATGCAACCGCACAAAACACGATTCCAATTTCTCCCATTGGAAGATTCTTATTGGCCCTACTGATTGGGAAGACTATTCGAAAGAAAAAGAAGGATCTGCAAGATACAGGATTCATAACCTCCCAGAGAAATCGAGTCCAGGAGTGTATGAGCTTGGAATAGCTGTGTCGTCGAGTAGTGGTTTGGGGCGTCGAATTTACAAGCTTGCCCCTGATCCTCAACGCATAGTTGTAGTTTACCTTGGACAAGCTGACAATGTGAGGACGCGACTCCAGCATTATGGCAGAAATGGAGCTCATTTGGGCATTAGCTGCTATTCAGATGATTCTTCTCTACAAAAGGGTAGATCATTGTTTCAGGAGATATTTTCACAAGGCTTCCCAATCGTTTATAGATGGGCTCCTATGCAACACAAGGTAGATGCCATAAGAACAGAAACTCAGCTGCTCAGTACATTTGATTACGCATGGAACACATGCAGTAATGGTACCCGGCGACCTGATGATATTCTTCAGATGCTCAACAAAATTGCTTCCGGCACTAGAACATTGTCAGATGTAGCCAAAGTGCTTCTACCTTTCACTCAGAAGCAAGAGGGAATCCGAATTAAATCAAGCAAGCTGCCTCTAACAGATGACAATTCAGATGAAGAACACAATGGCAGCTACAATTTCCTATCTCGCATATTCAAATTTAACAGATCACGTCCTAGGATAGTTCAGGATGTCACTGGTGGAGTCATTCAGGAGAATGGTAAAATTTGTGGAGTAACCTTAGGTGATGGTTCTATCTGTAGAAGGCCACCAGCTGAAAAAATAATGAGGTGTCCTGAACACAAAGGAATGAGAACAAATGTGTCCATTGCCAAAGCAAACAGAGCACCCAAGTCAGAGAGCACTGTGGCACTAGAACCTGATGTGTCTTGTCAAACAAAGGGCAATGGCTACAGATACCAAAATTTCAGCCATGAAATAGAAGACCCTCCACAAACAGTGGTTGAGAGTATTATCAACACTAATTTATGTGGAATCATCTTGGATGATGGCTCCCCTTGTAGAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCCTGAACACAAAGGAATGAGAATAAATGTGTCCACTGCCAAAGCAATCAGAGAATCCAAGTCAGAGAGCATTGTTGTGGTACTAGAACCTAATGTGTCATGTCAAACAAAGGGCAATGGCTACAGGTACCAAAATGTCACCCATGAAGTAGAACACCCTCCTCAAACAGTGGTTGAGAGTATCATCAACGCCAACATATGTGGAATCATCTTGGATGATGGCTCTACTTGTAGAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCCTGAACACAAAGGGAGGAGAATCCGTGCATCTATTCATGTATAA 1434 0.4324 MVTAVTTRLKREQCNRTKHDSNFSHWKILIGPTDWEDYSKEKEGSARYRIHNLPEKSSPGVYELGIAVSSSSGLGRRIYKLAPDPQRIVVVYLGQADNVRTRLQHYGRNGAHLGISCYSDDSSLQKGRSLFQEIFSQGFPIVYRWAPMQHKVDAIRTETQLLSTFDYAWNTCSNGTRRPDDILQMLNKIASGTRTLSDVAKVLLPFTQKQEGIRIKSSKLPLTDDNSDEEHNGSYNFLSRIFKFNRSRPRIVQDVTGGVIQENGKICGVTLGDGSICRRPPAEKIMRCPEHKGMRTNVSIAKANRAPKSESTVALEPDVSCQTKGNGYRYQNFSHEIEDPPQTVVESIINTNLCGIILDDGSPCRRQPVKGRKRCPEHKGMRINVSTAKAIRESKSESIVVVLEPNVSCQTKGNGYRYQNVTHEVEHPPQTVVESIINANICGIILDDGSTCRRQPVKGRKRCPEHKGRRIRASIHV. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03149 477 Pfam GIY-YIG domain-containing protein 23 183 - -
Seca10g03149 477 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 349 399 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03149 Seca-Chr10 45483791 45486624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03149 353 477 HRT Transcription Factor Family AT5G56780 37.600 7.15e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Seca10g03149 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03149 - - lang:109350609 626.32