Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03148 ATGAGCAGCCAAAAGGGTTGTTCTGGAAAGAAGGGTTCCCCTGATGTCACTGGCAAAGTGGTGGTTGTTGCAGCCAAAGCTTCCAAAGAAATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGCTCAACCAGGGGATTGCATTAAGCTGTTGGTTGTTATTCCAGCTATCTGCTCAAACAATAGGATATGGGGCCTCTCAAAGCTTGTTACTGATTGTATTACATCCCGTCTAGAAAATGATTCAGATCAGAGAGAAATTAGTGTAAATTCATGTTCTCAAATGGTGCTTCAACTTCATGATTTTTATGATCCACAGAAGATAAAGATCAGAGTAAAGATTCTTTCTGGTTCTTCATATGGAGCAGTGGCTGCTGAAGCCAGGAGAGTCCAATCAAGCTGGGTTATATTAGACAAAAAATTGAAAAATGAAAAGAAGTCCTGCATGGAGGAGCTGAATTGCAATATTGTAATCATGGGGAGATTTGGGCCAAAGGTTCTACAATTGAATTTGATCAATTCACCAAATATAGAACTTAAAGGGAACCTTAATGCATTTCCAAGAAACTTCAAAGACAAGTCTCAACATCCAGATAATACCACATGTCCAGTTGTTAGTAGTCCCAAACAAGGGTCAAATTGTCCTAGTATTCATGAGGAAGGTGAATCTGATTCAGAGAGGGAAAATATGAGTTTATCATCCAAAAGTTCATATTTCCAACCATGGATTTCAAATGCAATGTTTACTAGTATTGAGGATACTATGCTAAGATCCAGTGATGAGTCTTTGGTTTCTACCCCTGATGCATTGTTTCAGAAATTCTTGAAATTGGATCAAGATCCTATTTTAGGAATGGTGAATTGTAAACTTGATGTGAACTTAAGCAAAAGTGTTAGAGAAGCAATTTCACTAGCTAAAAATTCCCCTCCTGACACTCCTCCTCCATTGTGCTCTATTTGTCAGCATAAAGCACCTGTATTTGGGAACCCTCCAAGATGGTTTACATTTGCTGAACTGCAACTTGCCACAGGTGGATTTTCACAAGCAAATTTTTTGGCTGAAGGTGAGTTTGGTTCTGTACACCGTGGTGTCCTACCTGATGGCCAAGTCATTGCTGTTAAGCAGTGTAAATTAGCTAGTACTGAAGGAGATGAAGGATTTTGCTCAGAAGTAGAGGTCTTAAGCTGTGCACAACATTGTAATGTTGTGATGCTAATTGGATTTTGTGTGGAGGGTAGAAGAAGACTACTAGTTTATGAATACATCTGCAATGGATCTCTATATTCTCATCTTCATGGACAAAAGCAGAATGTACTGAAATGGTCTGCACGTCAAAAAATAGCAATTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGAGGCCTAACAATATTCTCCTCACTCATGACTTTCAAGCATTAGTGGGAGATTTTGGACTTGCCAGGTGGCAGCAGGATGGAGCAATGGGTGTGGAAACCAGGGTGGTTGGGACATTTGGGTATTTGGCTCCAGAATATACTCAAAGTGGTCAAATAACTGAAAAAGCTGATGTGTTCTCCTTTGGAGTAGTATTGCTGGAGCTTGTTACAGGACAAAAAGCTGTGGATATGAACAAGCCCAAAGGCCAGCAATGCCTCCATGAATGGGCACGTCCATTGCTAGAGGGAAATGCCATTCATGAACTGGTTGATCCAGGAATAAGGAACTGTGGTGTTGATCAAGAGGTTCATCGCATGTTGCAATGCTCCTCATTGTGCATCCAGCAAGATCCTAATTTAAGGCCACGAATGTCTCAGGTGCTCCGGATGCTGGAAAGTGGAAAGTGA 1869 0.4109 MSSQKGCSGKKGSPDVTGKVVVVAAKASKEISRTALVWALTHVAQPGDCIKLLVVIPAICSNNRIWGLSKLVTDCITSRLENDSDQREISVNSCSQMVLQLHDFYDPQKIKIRVKILSGSSYGAVAAEARRVQSSWVILDKKLKNEKKSCMEELNCNIVIMGRFGPKVLQLNLINSPNIELKGNLNAFPRNFKDKSQHPDNTTCPVVSSPKQGSNCPSIHEEGESDSERENMSLSSKSSYFQPWISNAMFTSIEDTMLRSSDESLVSTPDALFQKFLKLDQDPILGMVNCKLDVNLSKSVREAISLAKNSPPDTPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGEFGSVHRGVLPDGQVIAVKQCKLASTEGDEGFCSEVEVLSCAQHCNVVMLIGFCVEGRRRLLVYEYICNGSLYSHLHGQKQNVLKWSARQKIAIGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFQALVGDFGLARWQQDGAMGVETRVVGTFGYLAPEYTQSGQITEKADVFSFGVVLLELVTGQKAVDMNKPKGQQCLHEWARPLLEGNAIHELVDPGIRNCGVDQEVHRMLQCSSLCIQQDPNLRPRMSQVLRMLESGK. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03148 622 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 424 622 - -
Seca10g03148 622 SUPERFAMILY Protein kinase-like (PK-like) 328 618 IPR011009 -
Seca10g03148 622 Gene3D Transferase(Phosphotransferase) domain 1 424 622 - -
Seca10g03148 622 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 423 - -
Seca10g03148 622 ProSitePatterns Tyrosine protein kinases specific active-site signature. 469 481 IPR008266 GO:0004672|GO:0006468
Seca10g03148 622 Gene3D Phosphorylase Kinase; domain 1 320 423 - -
Seca10g03148 622 ProSiteProfiles Protein kinase domain profile. 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03148 622 Pfam Protein tyrosine and serine/threonine kinase 352 618 IPR001245 GO:0004672|GO:0006468
Seca10g03148 622 CDD STKc_IRAK 354 619 - -
Seca10g03148 622 MobiDBLite consensus disorder prediction 190 233 - -
Seca10g03148 622 MobiDBLite consensus disorder prediction 198 220 - -
Seca10g03148 622 PANTHER OS01G0750732 PROTEIN 278 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03148 Seca-Chr10 45468264 45474431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03148 323 614 Trihelix Transcription Factor Family AT1G68690 51.014 1.22e-96 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca10g03148 PK_Tyr_Ser-Thr 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03148 - - aprc:113855006 921.383