Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03144 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCATAATTCAAGGACCTGCACCACTTTCAGATCAGGGAGTTTTGTTGGAGTTCGTCTCTTTGGTGTTCAACTAGACATTTCTTCCTCTTGTTTCACCATCAAGAAGAGCTTTAGCATGGATTCCTTCCCTTCTTCTTCATCTTCTCCTTCTTCCTCCTCTTTTTCTTCCTCAAGGATTGCCATGGATGACAATTCTGCAGACAGAAACTCTATTGGGTATCTATCAGATGGTCTTATAGTTCGAGCACAAGACAGGAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACCGAACATTCCTAATAGGACTTGAGAAGCTGGGAAAAGGAGATTGGAGGGGTATCTCTAGAAACTATGTGACAACAAGAACCCCAACACAAGTTGCTAGCCATGCTCAGAAGTACTTTATTAGACTTGCATCCATTAATAAGAAGAAGAGACGTTCAAGTCTCTTTGACTTGGTAGTTGGTCATAATAATGGCAGCAGCACAAACAACACAGCCCCCCCAGCTCATCATCCAATTAGAAAATCAGGAGATTCTGCACTAGTTGTTTCAACTCATCAACAGGTTGTTAAATCTTCCAAATGTGATGATCAAGTTGAGAAAGATGCCACCTTGTCACTACTAGGATGCCTAACCTCATTTCAACAACAAGAAGTTACCAAATCAAATGAGCAGAAAATCACTTCTGCTGATATTAATTATCATAACTCTCAAGCTCAATATTCTTCAGCTGCAGAACATCAATCTGTGCCAATCTGGCTTCATCCTTCTAAGAACAAATCTTCAAATGTGACACCAAATGCATCAGTAGTTCCTGATCTGGAGCTCACACTTGCAGTCCCCAAGGCTAAGAGTACCCTGCAACAAGAACAAGCTAAATCATCCCCTGGTTCCTTCCTTCTTGGGCCAATTAGTGTCACCTAA 963 0.4185 MGRKCSHCGNIGHNSRTCTTFRSGSFVGVRLFGVQLDISSSCFTIKKSFSMDSFPSSSSSPSSSSFSSSRIAMDDNSADRNSIGYLSDGLIVRAQDRKKGVPWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLASINKKKRRSSLFDLVVGHNNGSSTNNTAPPAHHPIRKSGDSALVVSTHQQVVKSSKCDDQVEKDATLSLLGCLTSFQQQEVTKSNEQKITSADINYHNSQAQYSSAAEHQSVPIWLHPSKNKSSNVTPNASVVPDLELTLAVPKAKSTLQQEQAKSSPGSFLLGPISVT. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03144 320 SMART sant 99 149 IPR001005 -
Seca10g03144 320 PANTHER TRANSCRIPTION FACTOR KUA1 3 272 - -
Seca10g03144 320 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Seca10g03144 320 MobiDBLite consensus disorder prediction 51 71 - -
Seca10g03144 320 CDD SANT 102 147 IPR001005 -
Seca10g03144 320 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Seca10g03144 320 ProSiteProfiles SANT domain profile. 103 151 IPR017884 -
Seca10g03144 320 FunFam transcription factor MYB1R1 101 152 - -
Seca10g03144 320 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Seca10g03144 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Seca10g03144 320 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Seca10g03144 320 Gene3D - 101 153 - -
Seca10g03144 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03144 Seca-Chr10 45434926 45436431 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g03144 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03144 - - adu:107490116 313.538