Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03119 ATGGAGAAATCTGGATTTGTGTCTAGCATTAAGTCTGTTGATGATAAGGATCCATCATTTAATTTGTGTTCTAATGATTCTGATATTGGTGAGGAAGGTGAATTTTTTTATAATGATGAAAAAGAAGATATTGTTGTAGCTCATGATCAGCCTAGTAGGTTGATTGACTTGTCTGGGGATGAAATTATGTCCCTTGAATTTGGCAGTGAAGAAGAGGCATATAATTTTTATCAATTATATGCTCAGTTTCATGGGTTTGTGGTTAGAAAAGATGATGTAACGAAGGATATTAGAGGTAATATAATTATGCGGCAATATGTTTGCAACAGGGAGGGACTAAGAAATAAGAAGCACTTTATGAGGGTAGATAGGAAGAGAGAGCATAGGCCACTTACTCGTACAAATTGTCAATCCAAGCTTCGTATACACTACCATCAAAAGAGTTTAAAGTGGAAAGTGGTGTCATTTGAGCAATGTCATAACCATGAGCTTACACCTTCTAGATTTGTGCACCTACACTCTGCATACCGGGGGTTAACAGATGCTGATAAGGCTCAGGTTGATAGTTTGCATACATATGGTCTTAGAGGTTGTCACATTATGGGTTACCTTGTGGCTCAAAAGGGCTCCTATTGTCATGTTGGTTTTACGAAGAAGGACATGTACAACTATCTTGACCGAAAAAATCAAACAAAGGTGAAGAAAGGGGATGTACGTGCTGGCTTGAGTTACCTTCAAGGCAAGGCTGATAGTGACCCACTTTTATATGGGAAATACTCAACTGGATCTGATGGCAAATTAAAGCGGATTTTTTGGGCAGATGGGATAAGTAGGTATGATTTTCATTGCTTTGGTGATGTTCTTGCATTTGACACGACATACAAGATGAACAAGTACAATTATCAGGTTGTAATTTTTTCTGGTTTCAATCATCATTCACAAACAATTATTTTTGGTTGTGCTTTAGTCTCAGATGAAACAACTGAAACGTATAAGTGGGTTTTAGAAGCTTTCTTGGAAGCAATGGGTAACAAGCAGCCGAAAGCAGTAGTAACAGATGGTGATACTGCAATGCGGGAGGCTATTAAGCATGTTTTTCCAGAATCATGCCATCGCTTGTGTGCATGGCACTTACATAATAATGCTTGTGAGGATGTAAAATGTTCTCCGTTTTTGGAAGATTTCAAGAGAGCAATGTACTCGAATTTCACCCCGGATGAATTTGAGGAGTTTTGGAAGGAAAAGGTGGTTGAACATGGTCTTGTAGGAAACAAATGGGTGACCAAAATGTATGAAAATAAGGGATTGTGGGCTACGACATATCTTAGGGATAAGTTCTTTGGTTGTATAAGAACAATATCTCAATATGAATCTATTAATTCTTTCATTAGGTCATATTGTAAGAGGAAAAGTAGTATGGTTGAATTTTTGCACAAGTTTGAGCAGGCAAAGAAGGAGTACAAAAATAATGAGATGATGGCTGAATTTAGGTCTTTATTTTTTGAGCTGGTGCTAACTACATATCTTCGTAGCATTGAGAAAGAGGCTTCAAAAATGTACACTCAAGAGATTTTCAAAGAATTTAAGCAAGAAATTGAAAAGGCCAATGCATTGATTGTTTGTGAAAGATTAGTGTTAGAGGAGAATGTGATGTTCACTCTTAAAAAGTCCTGCATTCCTGGTAAAGCTGTTCATGTTATGTTTTATACTGCAAACACAAGTTTTATGTGTGACTGTAGGCATTTTGAATCTAGAGGGATTCCATGTTCCCATATTATATATGTCATGAGAAATGAGGATATTGATCACATTCCTAATAGTTTGATATGCAAACGATGGTTGAAGAATGCTAAGATTGATTTCATGTCCCATTATCAACATGACGAAATGGATTCTGATGTGATGGAAGAAGCTTGTTTTGCTGCAGTAAGTTCTGCTTGTAACAATTTTGCAAAGGTAGCATCAAAAAAGAGAAATTACTTAAAAGAGATATTGGAAGACATTCGCCAGCTGACTATAAAGTATGAAAAGTTGGGGGATAAGGTTTGCACAAATAGTAACCCATCAGTTGAACATGTAGGCGATCCCAATAGTGTGAAAACCAAAGGTGCACCTAAGAAGAAAAAGGATAACAGGAAGAGAAGAAGGCGTTGTTCTAACTGTGTTAGCACAGGACACACAATAAGGAGATGCCCATTAAGATATGGCACAGATCAGGACAGTAAAAGGGATGAAAAACTAGAAAAATCAGAAAGTGGTGCAAATGATAGTGTAAGTGTTTAA 2283 0.3697 MEKSGFVSSIKSVDDKDPSFNLCSNDSDIGEEGEFFYNDEKEDIVVAHDQPSRLIDLSGDEIMSLEFGSEEEAYNFYQLYAQFHGFVVRKDDVTKDIRGNIIMRQYVCNREGLRNKKHFMRVDRKREHRPLTRTNCQSKLRIHYHQKSLKWKVVSFEQCHNHELTPSRFVHLHSAYRGLTDADKAQVDSLHTYGLRGCHIMGYLVAQKGSYCHVGFTKKDMYNYLDRKNQTKVKKGDVRAGLSYLQGKADSDPLLYGKYSTGSDGKLKRIFWADGISRYDFHCFGDVLAFDTTYKMNKYNYQVVIFSGFNHHSQTIIFGCALVSDETTETYKWVLEAFLEAMGNKQPKAVVTDGDTAMREAIKHVFPESCHRLCAWHLHNNACEDVKCSPFLEDFKRAMYSNFTPDEFEEFWKEKVVEHGLVGNKWVTKMYENKGLWATTYLRDKFFGCIRTISQYESINSFIRSYCKRKSSMVEFLHKFEQAKKEYKNNEMMAEFRSLFFELVLTTYLRSIEKEASKMYTQEIFKEFKQEIEKANALIVCERLVLEENVMFTLKKSCIPGKAVHVMFYTANTSFMCDCRHFESRGIPCSHIIYVMRNEDIDHIPNSLICKRWLKNAKIDFMSHYQHDEMDSDVMEEACFAAVSSACNNFAKVASKKRNYLKEILEDIRQLTIKYEKLGDKVCTNSNPSVEHVGDPNSVKTKGAPKKKKDNRKRRRRCSNCVSTGHTIRRCPLRYGTDQDSKRDEKLEKSESGANDSVSV. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03119 760 SMART 26again6 575 602 IPR006564 GO:0008270
Seca10g03119 760 PANTHER OS01G0519700 PROTEIN 62 721 - -
Seca10g03119 760 MobiDBLite consensus disorder prediction 733 752 - -
Seca10g03119 760 ProSiteProfiles Zinc finger SWIM-type profile. 569 600 IPR007527 GO:0008270
Seca10g03119 760 MobiDBLite consensus disorder prediction 705 720 - -
Seca10g03119 760 Coils Coil 661 681 - -
Seca10g03119 760 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Seca10g03119 760 MobiDBLite consensus disorder prediction 686 760 - -
Seca10g03119 760 Pfam MULE transposase domain 287 381 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03119 Seca-Chr10 45136784 45139066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g03119 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03119 - - ccaj:109792835 904.049