Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03100 ATGAAGACGCAACCTCAACCAGACGGTGCCTCCGCCGCACCCAATCCCTGCGAAGGCGCAGAGAAGAAGAGCATCAACCCGGAGCTATGGCAAGCTTGTGCGGGGCCACTCGTGAATCTCCCTCCCGCTGGGACTCACGTTATCTACTTCCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTCTGAAGAAAGATGTGGATGCTCAAATTCCCAACTATCCCAATCTTCCCTCAAAATTACTCTGTCTCCTTCACAATGTCACCTTGCATGCTGATCCAGAAACGGATGAAGTATATGCTCAGATGACACTTCAACCTGTGCCTTCTTTTGACAGGGATGCTTTATTGAGATCAGATCTTGCTCTCAAGTCAAGTAAGACACAGCCTGAGTTTTTCTGTAAACAGCTCACCGCAAGTGATACAAGTACTCATGGAGGTTTCTCTGTACCTCGCCGAGCAGCAGAGAAGATTTTCCCTCCTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTGGCTAGGGATCTGCATGATACTGTTTGGACATTCCGCCATATATACCGTGGGCAACCAAAACGCCACTTGCTTACAACTGGTTGGAGTCTATTTGTCAGTGGAAAGAGGCTCTTTGCAGGAGACTCGGTTTTATTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCTACCAACATATCATCCTCAGTACTCTCAAGTGATAGTATGCACATTGGAATTCTTGCTGCTGCAGCTCATGCTGCTGCAAACAATAGTCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGCGTACAGCCACCAAATATCACCTGGCATGCGCTTCAGAATGATGTTTGAAACTGAAGACTCGGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGACCTGGATCCTGTGAGATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCTGTGACTGCTCCATTTTTCATATGTCCTCCTCCATTCTTTAGATCCAAGAGGCCAAGACAGCCAGGAATGCCTGATGATGAATCATCCGATTTTGATAACCTTTTCAAACGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTGCACTGGCTAGCTCATTGCAGCCAAATTATGTTCCTTCTTTATCAGGATCTGTTTTGCAAAATCTTCCTGGTGCAGATATTTCCCGTCAGCTGGGATTTTCTGCCCCACAAATTTCTCAGCCAAACAATGTAGCCTTCAATGCTCAGAGGCTACTTCAGACTGCACAACAACTTGATCACCAATCAAAGCTACCTTCTACTTCTAGCACATTGGGAACCATCCTGCAGCCGCAGCAACAGTTGGGGGATATCACTCAACAACCGAGGCAGAATTTGGCAAATCAAACTCTTCCACAGAGTCAAGTTCAGACCCAACTCCTGCATCCCCAGAATCTTGTCCAAACCAACAACATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAACTCCATAGAAGCCTTTCTCAGAACCAACTGCAGCAGCAGCAGCAGATAATTATGGGTCAGAATCAACAACAAAGTGTGATCCAGTCCCCTATGCCTGATCACCATCAACAATTACAAATGTCTGATAATCAGATTCAGTTTCAGTTGTTACAGAAGCTTCAACAACAAAAACAAATGCTCTTGGCACAGCAGTCTGCACTGCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAGAGGCAGCTTTTAGATAAAACACAAAACTTATCTAGAGCACTACCACCAGGTCAAGTGCTGCAAATTCCTCCTATGCTTCCAAATTCACTCCCTGAGACCAATACTGTCTCACATCATATGACAAAGGCTAGTAGCCAAAACAATAATCAGTTTTCTCATCTGCCTCAGCAGCCAAAGCTTCAACAACAGCAACCTGGCTTGCTGTCTGAAATGTCTGGCCAGATGGCACTTCCCCCTATCCCCACAACCAACCAGCTCTCTGCTGCTGGCAGTAGTATACTTACTGGAGCAGCTGGTGCAGGGCAATCTGTAATTACTGATGATGTTCCGTCATGTTCCACCTCACCTTCTACAAATAATTGTGCCAATGTACTTCCACAAATGATAAATTCCCGATTTCATAAAAGCACAATATTAGGGGATGACATGGCTCAGTCTGCTGCCACAATCTTAGGTTCAAGTGCCTTAGAAACCATGTCATCAAATACAAACTTGTTAAAAGATTTACAGCCAAAGTCTGAAGTTAAGCCTTCTCTCAACATTTCCAAAAATCAAAATCAAGGGAACTTTGTTCCTCAGACATACTTGAATAGTGGTGCTGCTCAGACAGATTATTTGGATACATCATCTTCTACATCAGTCTGTCTATCTCAGAGTGATGCTCATATGCATCAGAATAACAATCCACTACCTTACCATCCACAGTCTATGCTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGAGCAATATTCCATATGGCAATAACATCGATAGCCAAATGGGAATGCCATTGAATCCTGATTCCCTTTTAACCAAAGCCACATTGGGGATGGAGAAGGATTTGTCTAATAATTTCTCATCAGGAGGAATGCTTGGTAACTATGAAAATAACAGGGATTCTCAACAGGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGACTCCACAATAGATGATAGTAGCTTCTTGAATAGGGGTCCATGGGCTCCACCACCTATTCCGCCGCCGCCACCAGTGCCGCCAGCACAGTTTCAGCGAATGAGGACATATACCAAGGTATATAAACGGGGAGCTGTTGGAAGGTCCATAGACATAACTCGGTATTCGGGTTACGAGGAGCTTAAACAGGATCTGGCTCGTAGGTTTGGTATAGAGGGACAATTGGAGGATCGGCAAAGGATAGGATGGAAACTTGTCTATGTGGATCATGAGAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGTATTAAGATACTTTCTCCTCAAGAAGTGCAGCAGATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTGCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACTTAA 3357 0.4489 MKTQPQPDGASAAPNPCEGAEKKSINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDRDALLRSDLALKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAAYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDESSDFDNLFKRTMPWLGDDMCMKDPQGLPGLSLVQWMNMQQNPALASSLQPNYVPSLSGSVLQNLPGADISRQLGFSAPQISQPNNVAFNAQRLLQTAQQLDHQSKLPSTSSTLGTILQPQQQLGDITQQPRQNLANQTLPQSQVQTQLLHPQNLVQTNNILQQQQPSIQNHQLHRSLSQNQLQQQQQIIMGQNQQQSVIQSPMPDHHQQLQMSDNQIQFQLLQKLQQQKQMLLAQQSALQQPTQLTQIQDQQRQLLDKTQNLSRALPPGQVLQIPPMLPNSLPETNTVSHHMTKASSQNNNQFSHLPQQPKLQQQQPGLLSEMSGQMALPPIPTTNQLSAAGSSILTGAAGAGQSVITDDVPSCSTSPSTNNCANVLPQMINSRFHKSTILGDDMAQSAATILGSSALETMSSNTNLLKDLQPKSEVKPSLNISKNQNQGNFVPQTYLNSGAAQTDYLDTSSSTSVCLSQSDAHMHQNNNPLPYHPQSMLFRDNSQDGEVQADARSNIPYGNNIDSQMGMPLNPDSLLTKATLGMEKDLSNNFSSGGMLGNYENNRDSQQELSSSMVSQTFGVPDMTFNSIDSTIDDSSFLNRGPWAPPPIPPPPPVPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT. 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03100 1118 FunFam Auxin response factor 1001 1095 - -
Seca10g03100 1118 FunFam Auxin response factor 296 367 - -
Seca10g03100 1118 CDD B3_DNA 131 223 IPR003340 GO:0003677
Seca10g03100 1118 Gene3D - 296 367 - -
Seca10g03100 1118 SMART B3_2 132 234 IPR003340 GO:0003677
Seca10g03100 1118 ProSiteProfiles PB1 domain profile. 1006 1090 IPR000270 GO:0005515
Seca10g03100 1118 Gene3D - 1001 1095 - -
Seca10g03100 1118 MobiDBLite consensus disorder prediction 669 704 - -
Seca10g03100 1118 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g03100 1118 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca10g03100 1118 FunFam Auxin response factor 130 234 - -
Seca10g03100 1118 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Seca10g03100 1118 SUPERFAMILY DNA-binding pseudobarrel domain 121 261 IPR015300 -
Seca10g03100 1118 MobiDBLite consensus disorder prediction 658 704 - -
Seca10g03100 1118 Pfam AUX/IAA family 1005 1091 IPR033389 -
Seca10g03100 1118 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 615 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca10g03100 1118 Gene3D - 130 233 IPR015300 -
Seca10g03100 1118 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Seca10g03100 1118 SUPERFAMILY CAD & PB1 domains 1019 1084 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03100 Seca-Chr10 43952952 43960071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03100 14 493 B3 DNA Binding Superfamily AT1G19220 72.050 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca10g03100 B3 3.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03100 - - ccaj:109803454 1847.79