LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03099	ATGTCGAGGTTGAATAATGCAGAGAAGAAGCTTGGTGCAGGACGTGTGGTGGCTGTGGCAATTGAGAATAACAAGTCAAGCCAACATGCTGCCAAGTGGGCAGTGGAAAATCTTCTTCCCAAAGATCAATCCCTCTTTCTAATCCACATTAAACAAAGAGCCCCTTCCAATCCCACACCATCAACATCGGGAAACCAAGTAGCCAATGAAGTGCAGGAAGATGCGTTCGACAATGAATCCAAAGAACTATTTGATTCATTTCGTGTATTTTGCAACAGAAAAAGTATACCATGCAAAGAAGTATTGTTGGAGGACACAGATATATCCAAGGCATTAATAGAAAGCATTACCTCACATTCCATTGAGCTTTTGGTACTTGGGGCACCATCAAGGGGTGGCCTTGTTAGAAGATTTAGAACAACGGATGTTCCAAGCACGGTATCAAAAGGGGCACCAGCATTCTGCACTGTATACATAATTTCTAAAGGAAAAATTTCAAGTGTGAAATCTGCTACATCTCAACTTCCTAAATCTTCACCACCACGTAACCAATTGCAACAACAGCCACAGCCACAGCCACAGCCAGCACGCCGAAGTGTTGATAAGATAGACCCACAATCCACACGTAGCTACCCACCAAGACCTTCTGCATCAGAGAAGCCAGCATATTTGACACGCCAGCTACTAGATGAAGATGACATCATATCACCATTCACAAGAATGAACAGATCATATGAGTCCTCAGTTCCAGATTCTGATATATCATTTGTGAGCAGTGGAAGGCCAAGTGTTGATAGAATGTTCCCATCATTATATGATGATCTAGACAATGGAACAGCCCCTAGGCTTTCATATGGCTCAGATTTTGATGCCAGAAGCTATGGTTCATCCTTCTCAGGACCTAAGTCAATTGACATGGGTGGTTCTGTGGATGGTTTCTCATTCAGCTCACAAGGCAGTGAGATCTCATCATTAAGGTTATCTGACCACAGGGATGATGTGGAAGCAGAAATGAGAAGACTGAAGCTAGAATTGAAGCAAACAATGGAAATGTACAGCTCAGCTTGCAAGGAAGCTTTGACAGCAAAACAGAAGGCAATGGAACTTCAACGTTGGAAGGTGGAAGAACAAAAGAAGTTGGAAGAAGCACAAATGGTTGAAGAAGCAGCATTGTCACTTTTAGAGAAGGAACAAGAAAAGTCTAGAGCTGCCTTAAAGGCAGCAGAAGCATCTCAGAGAATTGCAATTGCAACATTGGAAGCACAAAAGAGAATGAATGCAGAGATGAAAAGTGAATCAGAAGTAAGTCATAGGATGAGGTCAGAAGATTCTTATGTACATTGTCCTGCCAGATATAGAAGATACACTATTGAGGAAATTGAAGAGGCAACACAAGGCTTCTCAGATGCTCTCAAAATTGGTGAAGGAGGTTATGGTCCTGTATATAGGAGTGAACTAGATCACACACAGGTTGCAATAAAAGTTTTGAAGTCAGATGCAGCTCAAGGAAGAGCACAGTTTCAGCAAGAAGTTGAAGTGTTGAGTTGCATAAGGCATCCAAACATGGTTCTTCTCCTTGGAGCATGTCCAGAATATGGTTGCCTAGTATATGAGTACATGGCTAATGGAAGTTTGGATGATTGCCTCTTTAGGAGAGGTAAGGCACCACCTCTTCCATGGCAATTAAGATTCCAAATTGCTGCAGAGATAGCCACAGGTCTCCTTTTCCTTCACCAGACAAAACCAGAACCACTTGTGCACCGTGACTTAAAACCAGGCAATATTTTGCTTGACCGTAACTATGTAAGCAAGATTGGTGATGTGGGGTTGGCAAGGCTTGTTCCTCCTACAGTTGCAGACACTGTGACTCAATACCGAATGACATCAACTGCTGGAACTTTCTGTTATATTGACCCTGAGTACCAACAAACAGGCATGCTTGGGATCAAATCTGATATATACTCACTAGGGATCATGCTTCTACAAATGGTAACAGCCAAACCTCCAATGGGTTTGACTCATCATGTTGGAAGATCTATTGAGAAGGGGACTTTTGCTGACATGCTTGATCCAGCTATTGAAGACTGGCCAATGGAGCAAACTATGCATTTTGCTAAACTTGCCTTGCAATGTGCTGAAATGAGGAGGAAAGATAGACCTGATCTTGGAAAAGTTGTATTACCTGAGCTCAATAAACTCAGAACATTTGCTGAAGAAAACATGCCTATGATGATGTTTAGAGGTGGTGCAGGATTCAATCCTAGATGTAGCACATCTCCTATACATTCCACAACTTCCACAATGCAAGACATTGCAAGTGAATCCCAGTCCCTATCTGGCATCTCTGGATATGAAAGCCGCTCAAGCACATCATCAGTGGGGAGAGTGTAA	2391	0.4258	MSRLNNAEKKLGAGRVVAVAIENNKSSQHAAKWAVENLLPKDQSLFLIHIKQRAPSNPTPSTSGNQVANEVQEDAFDNESKELFDSFRVFCNRKSIPCKEVLLEDTDISKALIESITSHSIELLVLGAPSRGGLVRRFRTTDVPSTVSKGAPAFCTVYIISKGKISSVKSATSQLPKSSPPRNQLQQQPQPQPQPARRSVDKIDPQSTRSYPPRPSASEKPAYLTRQLLDEDDIISPFTRMNRSYESSVPDSDISFVSSGRPSVDRMFPSLYDDLDNGTAPRLSYGSDFDARSYGSSFSGPKSIDMGGSVDGFSFSSQGSEISSLRLSDHRDDVEAEMRRLKLELKQTMEMYSSACKEALTAKQKAMELQRWKVEEQKKLEEAQMVEEAALSLLEKEQEKSRAALKAAEASQRIAIATLEAQKRMNAEMKSESEVSHRMRSEDSYVHCPARYRRYTIEEIEEATQGFSDALKIGEGGYGPVYRSELDHTQVAIKVLKSDAAQGRAQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGKAPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKIGDVGLARLVPPTVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMVTAKPPMGLTHHVGRSIEKGTFADMLDPAIEDWPMEQTMHFAKLALQCAEMRRKDRPDLGKVVLPELNKLRTFAEENMPMMMFRGGAGFNPRCSTSPIHSTTSTMQDIASESQSLSGISGYESRSSTSSVGRV.	797

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03099	796	SUPERFAMILY	Protein kinase-like (PK-like)	444	726	IPR011009	-
	Seca10g03099	796	Gene3D	Phosphorylase Kinase; domain 1	437	539	-	-
	Seca10g03099	796	MobiDBLite	consensus disorder prediction	170	195	-	-
	Seca10g03099	796	ProSiteProfiles	Protein kinase domain profile.	467	730	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03099	796	Gene3D	Transferase(Phosphotransferase) domain 1	540	745	-	-
	Seca10g03099	796	PANTHER	OS02G0152300 PROTEIN	16	747	-	-
	Seca10g03099	796	Coils	Coil	380	413	-	-
	Seca10g03099	796	Gene3D	HUPs	15	160	IPR014729	-
	Seca10g03099	796	MobiDBLite	consensus disorder prediction	757	796	-	-
	Seca10g03099	796	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	585	597	IPR008271	GO:0004672\|GO:0006468
	Seca10g03099	796	FunFam	U-box domain-containing protein 51	540	740	-	-
	Seca10g03099	796	MobiDBLite	consensus disorder prediction	170	226	-	-
	Seca10g03099	796	CDD	STK_N	16	163	-	-
	Seca10g03099	796	SMART	serkin_6	467	737	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03099	796	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	440	539	-	-
	Seca10g03099	796	Pfam	Protein kinase domain	470	722	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03099	796	Pfam	Universal stress protein family	15	152	IPR006016	-
	Seca10g03099	796	Coils	Coil	331	351	-	-
	Seca10g03099	796	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	17	139	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03099	Seca-Chr10	43948208	43953160	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g03099	1	777	Receptor kinase-like Gene Family	AT1G78940	53.788	0.0	755

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Seca10g03099		Pkinase	1.3e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03099	-		-	gmx:100803837	1111.29