Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03083 ATGTTAGAAGGTGGTGCAAAATTCCCGGGAATAATTGACCTCAACAAACATAATAATAACTATTATAATTTCTCTCAAGGATTTTACCATAAGCTTGAGGATGGCACCAATATGTCAATTGACAGCATTGGCAGCTTGCAAACAAGTAATGGTGGAGGATCTGTTGCAATGTCTATTGATAATAGCAGTGTTGGGTCCAACGATTCCCATACTCGTATGTTGAACCACCAAGGGTTGCGGAGGCGTGCCAATGATAACTACTCCGTTGCACATAGTGTCAATCACCGAGGAAGAGTGACACATGCTTTGAGTGGTGATGCATTGGCTCAAGCTCTAATGGACAGTAATTCCCCAACTGAGGGGCTTGAGAATTTTTATGAGTGGACGATTGATTTGAGGAATCTTAGTATGGGTGAGGCTTTTGCGCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAACAATGAAGATGTTGCTATTAAACTCTTGGAGAGGCCTGAAAATGATCCAGGAAAGGCTCAGTTTATGGAACAACAATTTCAGCAGGAGGTCATGATGCTAGCTACACTAAAGCATCCTAACATAGTTCGTTTTATTGGTGCATGCCGTAAGCCAATGGTGTGGTGCATTGTTACAGAATATGCCAAAGGGGGTTCAGTTCGACAGTTTTTAATGAAGCGTCAAAATCGATCAGTTCCTCTCAAATTGGCTGTCAAACAAGCTTTGGATGTTGCAAGAGGGATGGCATATGTTCATGGCCTTGGGTTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAATCTATTAAAATTGCTGATTTTGGAGTTGCCCGGATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTATGGGAACTAATCACTGGAATGCTCCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTGAACAAAAATGTTCGCCCAATCGTACCCAATGATTGCTTACCTGTTCTCCGTGAGATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGGCCACCATTTACTGAAATTGTAGAAATGCTTGAGAATGCAGAGACTGAGATCATGACAACTGTTCGGAAGGCCCGTTTTAGGTGTTGCATTACCCAACCAATGACTGCTGACTGA 1251 0.4293 MLEGGAKFPGIIDLNKHNNNYYNFSQGFYHKLEDGTNMSIDSIGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLNHQGLRRRANDNYSVAHSVNHRGRVTHALSGDALAQALMDSNSPTEGLENFYEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEDVAIKLLERPENDPGKAQFMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIVPNDCLPVLREIMTRCWDPNPDVRPPFTEIVEMLENAETEIMTTVRKARFRCCITQPMTAD. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03083 416 CDD STKc_MAP3K-like 142 389 - -
Seca10g03083 416 Gene3D Transferase(Phosphotransferase) domain 1 218 411 - -
Seca10g03083 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca10g03083 416 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Seca10g03083 416 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03083 416 FunFam Serine/threonine-protein kinase isoform 1 126 217 - -
Seca10g03083 416 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Seca10g03083 416 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Seca10g03083 416 PRINTS Tyrosine kinase catalytic domain signature 251 269 IPR001245 GO:0004672|GO:0006468
Seca10g03083 416 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672|GO:0006468
Seca10g03083 416 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Seca10g03083 416 FunFam serine/threonine-protein kinase HT1 218 411 - -
Seca10g03083 416 Pfam Protein tyrosine and serine/threonine kinase 136 389 IPR001245 GO:0004672|GO:0006468
Seca10g03083 416 SUPERFAMILY Protein kinase-like (PK-like) 118 389 IPR011009 -
Seca10g03083 416 SMART serkin_6 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03083 416 PANTHER SERINE-THREONINE PROTEIN KINASE 57 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03083 Seca-Chr10 43674142 43678957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03083 24 416 MAP Kinase Kinase Kinase AT2G24360 78.880 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca10g03083 PK_Tyr_Ser-Thr 2.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03083 - - gmx:100788536 786.563