Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03073 ATGACGAAATCTGAATTTGTCTCAAATATTAACTTGGATGATGATAAGGATCCGATGTTTCATTATACATCTGAATCTGATGACTTAGTTGGTGGAGATGAAGTTGAATTTTATGAAAAGTTTGAAAAAGAAGAGTCTGATTTACTGAATGGTAAAGTCAATAAGTTGTTCGATCTCTCTGTTGATGAAATCTTGTCTCGTGAGTTTGGCAGTGAAGAAGAGGCATATAATTTCTATCAATTATATGCTAGGTATCATGGCTTTGTGGTTAGGAAAGATGACACAACGAAGGATATTAGAAGAAATTTACTTATGCGACAATATGTTTACAATAGGGAGGGATTAAGAAACAAAAAGCACTTTATGAGAGTGGATAGGAAGAGAGAGCATAGGCCACTTACTCGTACAAATTGTCTAGCCAAGCTTCATATACACTACCATCACAAGAGTTTAAAGTGGAAAGTTGTGTCATTTGAGCAGTGTCATAACCATGAGCTTACTCCATCTAGATATGTGCACCTACACCCTGCTTACCGTAGGTTAACAGATACGGATAAGGCCCAGGTTTATACTTTATATGCTCATGATCGCAGAGGTTGTCATATTATGGGGTACCTGGTGGCTCAAAAGGGGAGTATTATCATGTAG 648 0.3719 MTKSEFVSNINLDDDKDPMFHYTSESDDLVGGDEVEFYEKFEKEESDLLNGKVNKLFDLSVDEILSREFGSEEEAYNFYQLYARYHGFVVRKDDTTKDIRRNLLMRQYVYNREGLRNKKHFMRVDRKREHRPLTRTNCLAKLHIHYHHKSLKWKVVSFEQCHNHELTPSRYVHLHPAYRRLTDTDKAQVYTLYAHDRRGCHIMGYLVAQKGSIIM. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03073 215 Pfam FAR1 DNA-binding domain 77 167 IPR004330 -
Seca10g03073 215 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03073 Seca-Chr10 43529597 43530244 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g03073 FAR1 1.6e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03073 - - ccaj:109792835 219.55