Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03034 ATGGAGGCACAACCCACCGGCAATAAGCTCCGGCTGATGTGCAGCTACGGCGGCCACATACTCCCCCGTCCACGCACCAACTCTCTCTGCTACGTCGGCGGCGAAACCCGCATCGTTTCAATGGACCGCCGCACCGTCACCACTCTTTCCTCTTTGGTTTCTCACCTCTCCTCTGTTCTCTCTCTCACCTTCCCTTTCTCTCTCAAGTACCAGCTTCCCAACCTCGACCTTGACTCCCTCATCTCCCTTTCCTCCGATGACGATTTCCACGTCCTCATCGATGAGCATAACCGTCTCTCTTCTTCTTCCTCTCGCATAAGGCTCTTTCTCTTCCCTCTCATTCGCCACCCCAAAACAGAGTCTTGGTTCGTCGATGCCCTCAAGAATGCTAACATTGAGCATCCTCACTCTGAACACTCTCATCACTTTCTCTCTTCTGCTCCTCTTGTTGACTCTGTGCTTTTGGACTCGAGTTCGTCTTTTGGGTCTGCTTCGTCTTCTGCTTCTTTCACCAATTTGCCTCCCATAAGACCTCAGTGTGAGGACAACGACGCCGTTTTCAAGTTTACCACTTCAGATACAATTGCGAGTGATAATACTGTTTCAAGTATTATGTCCAACCAGCAGAATGTATCTTACCAAGACCCTGTGGTTCATGTTTCGGAGGCAAGACTCAATGCAGAATCTATTGAAGTTGAAAGTAAAATCCCCTATATTTCCTCTGGGGTCATAGCCAATAACACAAATATGGATAAAGGGTATTATTCATTTCCACAGTTTAATCAAGTGGAGAGGCCACATTTGCAGTATGTGCCAGCTGCAACACAATTTTTACCTCTTCACCCAAGTTCCATGTTGCCAGTTCAAACTTGCCAGGTTATTTACCAGCCACCGCGTTCTTTGCAGCATCTGGTTTATCATCCTAATCAACCATGCCCTGTCTACCTTGTGCCTATTGGAAACATGCCTCCCAATAGTTTGCCTATAAATGCCACTAGCCAAGCTTCCTTGAATCTAAATGCTTCCTTTATGAATTGTCATGTAGCTCAAGACCCTGAAGTGGGAGCCATGTCTTCTTTTGCTCATGGTTCTCTTACCTCTCAGAATTACTTAACTGACAATGCAACTACATCTTTTGTTTATGTACCTTGCAATGGAAGTCAGCAGCCAGAAATGGGTATTTATCAGCAATCTCAGAACATACCTGTCACTTCCAGGGAGTTTCCCAACCCCAAGTATGGAAATGAACTTGATGATGACTTCACTCATGCTCAGATATATAAATCTCAGCCCCCACCTCCAACAATGTCTTCTAAATACCAAACCATGACAAAAGAAACAACAAACCTGATATCAGAGGCTCTTGCTCAATTGCATGTGGATAACCTCAAGCAGCAGACAGAAACATCACAACCACAGTGA 1422 0.4571 MEAQPTGNKLRLMCSYGGHILPRPRTNSLCYVGGETRIVSMDRRTVTTLSSLVSHLSSVLSLTFPFSLKYQLPNLDLDSLISLSSDDDFHVLIDEHNRLSSSSSRIRLFLFPLIRHPKTESWFVDALKNANIEHPHSEHSHHFLSSAPLVDSVLLDSSSSFGSASSSASFTNLPPIRPQCEDNDAVFKFTTSDTIASDNTVSSIMSNQQNVSYQDPVVHVSEARLNAESIEVESKIPYISSGVIANNTNMDKGYYSFPQFNQVERPHLQYVPAATQFLPLHPSSMLPVQTCQVIYQPPRSLQHLVYHPNQPCPVYLVPIGNMPPNSLPINATSQASLNLNASFMNCHVAQDPEVGAMSSFAHGSLTSQNYLTDNATTSFVYVPCNGSQQPEMGIYQQSQNIPVTSREFPNPKYGNELDDDFTHAQIYKSQPPPPTMSSKYQTMTKETTNLISEALAQLHVDNLKQQTETSQPQ. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03034 473 SMART PB1_new 24 113 IPR000270 GO:0005515
Seca10g03034 473 CDD PB1_UP2 13 111 - -
Seca10g03034 473 Gene3D - 29 112 - -
Seca10g03034 473 Pfam PB1 domain 25 112 IPR000270 GO:0005515
Seca10g03034 473 SUPERFAMILY CAD & PB1 domains 27 112 - -
Seca10g03034 473 PANTHER OS05G0427100 PROTEIN-RELATED 5 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03034 Seca-Chr10 42542444 42545062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03034 10 112 MAP Kinase Kinase Kinase AT1G04700 45.714 1.07e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03034 - - aip:107644557 459.529