Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03002 ATGATCATCAACCGCCCCGACATCCCCAAAACTCGCCGTCGACCGGTTCGACCCAACGACTCCCCTTCTCAGACCGCTCCCGAACCGGACGAACCCACTTCCCACTCCGACCCATTGCACAACTGGGTCCATGGGAAACTTGCTTCCGAGGCCGAACCGGACCAACCCGGTTCGCCAAAATTGGAACTTGACAAGGCCCAGAGGAAGTACTACAACAAACGGAGGAAGAGGATGTATGGGTCCGACTCCGACGAAGAAAACCGGCGACCTGAGGAGAAGTTCGTGGAGCTGAAGCCTGAGGTGGTGGAGCTTCCCACGTTGCACAGGAGAGAGGAGGAGTTGTATTTCTATGATGCTTTTGCTTATCCATGGGAGAAGGAGAAGCACTATAAGATGGTTTATCAGTTGGAGAAGAAGTACTTCCCTGACCAATGCCTTGACAAAGCGTTTCTCCAACCTGGACAACAATCAAATTCAGATTTAAATGCAAAGGTTAAGGATAAGAAGAAAGTTGGGGGTATTAATAAAGATGGGGTTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAAAAGGGAGGAAGAAAAAGAAAAAGAAAAGGATAAGGATGATGATTCATCATGTAAAGATCTTACGGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAAGTTCCCAATAAGGATGCTCAAGTTGGTGAGCCATTTCTTTCTTCAAGGAGGACTGGCCTCCCTCCCATTTGGGATAGTCCACATGGCACCGTGCTTTTGGTTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGCCACGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGAGAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTGAGTTAA 1014 0.4714 MIINRPDIPKTRRRPVRPNDSPSQTAPEPDEPTSHSDPLHNWVHGKLASEAEPDQPGSPKLELDKAQRKYYNKRRKRMYGSDSDEENRRPEEKFVELKPEVVELPTLHRREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQQSNSDLNAKVKDKKKVGGINKDGVGDNKLVFFEEKREEEKEKEKDKDDDSSCKDLTEKKVEEFFKGLKKVPNKDAQVGEPFLSSRRTGLPPIWDSPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSPVS. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03002 337 MobiDBLite consensus disorder prediction 1 93 - -
Seca10g03002 337 SUPERFAMILY Pseudouridine synthase 245 336 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca10g03002 337 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 139 336 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca10g03002 337 Gene3D Pseudouridine synthase 249 337 - -
Seca10g03002 337 MobiDBLite consensus disorder prediction 76 93 - -
Seca10g03002 337 Pfam TruB family pseudouridylate synthase (N terminal domain) 274 334 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03002 Seca-Chr10 40895026 40900047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03002 255 327 NAC Transcription Factor Family AT3G57150 45.205 1.64e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03002 K03177 - cave:132182858 429.483