Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02998 ATGGTTCATTTTGATGAGCTAAGAGTATATTTGTTTTGCAGGAGTTGGGTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAACACTACTCTGTCAACAGATGATCAAATCAAGGACTGTGGAGCATTTCGTGAATGCCCAAAATGTCACTATCATATTGATAACAGTGATGTTTCTCCTGAGTGGCCAGGATTTCCTGCTGGTGTAAAGTTTGATCCTTCTGATATTGAACTTATAGAACATTTAGCAGCAAAGTGTGGCATTGGAAACAGAGAGCCACACATGTTTATCCATGAGTTCATCCCAACTCTGGAAGGAGACAAAGGTATTTGCTACACACATCCAGAAAAACTTCCAGGTGCTAAGAAGGATGGGAGCAGTGTTCATTTCTTCCACAAAACAGTTTATGCATATGCTACTGGACAAAGAAAGCGTAGAAAGATCCATCATAATGGTTTGAATGAGGAGCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTATAGTAGAAGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATGTAAGATCTAAGAAAGGATCCAAGCCAGAAAAGTCCAATTGGGTGATGCATCAATATCATATAGGAAGTAAAGAAGATGAGAAGAATGGTGAGTATGTTGTTTCAAAAATCTTTTATCAACAGCAGAAACAGACTGAGAAAAATGAGGAGAATCCAGTAGTTGAAGATTCTGACATGGCATTAAGAACTAGTCCAAGAACCCCAAAACCAAATCCCCCCACTCGACCTCAAACAGGCCAATGTGTTGACTGTGATGACAATTTTGATGAAAATGAAGATGCTAAGCCTATGCCTGGAGAATCGCATGCTCTACCATCTGATGTTAAGAATGAGGATAATATGGGCGACCCTGCATATTTAGCTGGTGAATCACAGGCTGACTGTGACTTTGATGGTTTGGATGATATCTTATTATGCAAGGAGATGTTAGATTCTTCTGCTGTCATGAATGATTCTGGATTGAACTTCACTTTTAATAGCTTTGCTTGCAATGAAAATGAGGCATTTTATGGAATTCCTGTCTTGGACACCTTGGAATTGGATACTCCTCCAGATTTTGATCTTTCTGTAAGCATCAATTTACGCAATTTGCAATTTTGTTCTCAAGACAGTAGTATCCTTCAGTGGATGGGCAGATTATGA 1200 0.3917 MVHFDELRVYLFCRSWVIDIGGFAKKVKNTTLSTDDQIKDCGAFRECPKCHYHIDNSDVSPEWPGFPAGVKFDPSDIELIEHLAAKCGIGNREPHMFIHEFIPTLEGDKGICYTHPEKLPGAKKDGSSVHFFHKTVYAYATGQRKRRKIHHNGLNEEHVRWHKTGKTKAIVEDGVHKGFKKIMVLYVRSKKGSKPEKSNWVMHQYHIGSKEDEKNGEYVVSKIFYQQQKQTEKNEENPVVEDSDMALRTSPRTPKPNPPTRPQTGQCVDCDDNFDENEDAKPMPGESHALPSDVKNEDNMGDPAYLAGESQADCDFDGLDDILLCKEMLDSSAVMNDSGLNFTFNSFACNENEAFYGIPVLDTLELDTPPDFDLSVSINLRNLQFCSQDSSILQWMGRL. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02998 399 Gene3D NAC domain 75 231 IPR036093 GO:0003677|GO:0006355
Seca10g02998 399 SUPERFAMILY NAC domain 50 226 IPR036093 GO:0003677|GO:0006355
Seca10g02998 399 Pfam No apical meristem (NAM) protein 67 207 IPR003441 GO:0003677|GO:0006355
Seca10g02998 399 MobiDBLite consensus disorder prediction 228 294 - -
Seca10g02998 399 ProSiteProfiles NAC domain profile. 66 226 IPR003441 GO:0003677|GO:0006355
Seca10g02998 399 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 14 296 IPR044799 GO:0003700
Seca10g02998 399 FunFam NAC domain-containing protein 8 75 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02998 Seca-Chr10 40830624 40834399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02998 31 228 NAC Transcription Factor Family AT1G28470 53.695 1.29e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g02998 NAM 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02998 - - gmx:100780662 588.186