Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02985 ATGGAGAAAAAAGAGGTTGGACAAAACCTATGGAACGGTGATAGAGATGCTCAAATTCAAGCAGCTATGGAACTAAGTAGATTATGCAGTAAGCAGAGGCACAATTTAGCAGAAAGTGGAGTTATGGTTCCTCTAGTTTCCATGCTTCATTCTGAAAACTATGAAGCCATAGAAGCTGCTCTTTGTGCTCTTCTCAGCCTTTCCTTTGGCAGTGAACGAAACAAGATTCGGATAATCAAGTCTGGAGCTTTGCCAGTTTTGCTGAATCTCCTCCATTGTCAAAGCCAGACAGTTGTACAATTGACAGTAGCTGCCATGCTAACACTCTCTTCTTGCAAGGCAAATAAGGTAGCAATTGCTTCATCTGGGGCTGTTCAACTCTTGGCTGAACTTGTCCATAGCAGTAGCACTCAGTCTCAGCTTGATGCTATAGCAACTCTCCACAACCTCACAACCTGCCAAGAGCTTATTCCATTGATTGTCTCTTCTGGAGTTATATTCTCCTTGCTTGAACTGATCCACAGCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTACTGGGGGAGCAATTCGGATACTGGTTGAGACTATTGAAGATGGATCTTTACTAGGCAAAGAGCATGCAGTGGGTATACTTCTCCTTATATGCCAGAGCTGCAGAGAAAAATACAGAGGATTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAGTTGTTGTTGTTACTCAGGGATTGCTCCAATTATAGCTCAAGACGTAAACAAATTAATCATGAGCTTATAGAACAGATAATGGAAGAAATTGATGCAGAAGGAGAGAAATTGGCAGATACTACTTTGAGGTTGGTAGAGGAGATGATTGCAAAGCTCAATACATAA 987 0.4225 MEKKEVGQNLWNGDRDAQIQAAMELSRLCSKQRHNLAESGVMVPLVSMLHSENYEAIEAALCALLSLSFGSERNKIRIIKSGALPVLLNLLHCQSQTVVQLTVAAMLTLSSCKANKVAIASSGAVQLLAELVHSSSTQSQLDAIATLHNLTTCQELIPLIVSSGVIFSLLELIHSSVKSSPLVEKAIGLLENIVSSSESALCEAASTGGAIRILVETIEDGSLLGKEHAVGILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRRKQINHELIEQIMEEIDAEGEKLADTTLRLVEEMIAKLNT. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02985 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 40 82 IPR000225 GO:0005515
Seca10g02985 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 208 IPR000225 GO:0005515
Seca10g02985 328 FunFam U-box domain-containing protein 4 201 317 - -
Seca10g02985 328 Gene3D - 1 112 IPR011989 -
Seca10g02985 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 124 IPR000225 GO:0005515
Seca10g02985 328 FunFam U-box domain-containing protein 4 4 197 - -
Seca10g02985 328 Gene3D - 113 325 IPR011989 -
Seca10g02985 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 165 IPR000225 GO:0005515
Seca10g02985 328 PANTHER U BOX DOMAIN-CONTAINING 14 282 - -
Seca10g02985 328 SMART arm_5 29 69 IPR000225 GO:0005515
Seca10g02985 328 SMART arm_5 153 195 IPR000225 GO:0005515
Seca10g02985 328 SMART arm_5 112 152 IPR000225 GO:0005515
Seca10g02985 328 SMART arm_5 71 111 IPR000225 GO:0005515
Seca10g02985 328 SUPERFAMILY ARM repeat 8 310 IPR016024 -
Seca10g02985 328 Pfam Armadillo/beta-catenin-like repeat 72 106 IPR000225 GO:0005515
Seca10g02985 328 Pfam Armadillo/beta-catenin-like repeat 30 68 IPR000225 GO:0005515
Seca10g02985 328 Pfam Armadillo/beta-catenin-like repeat 114 151 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02985 Seca-Chr10 40263382 40265336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02985 8 281 U-box Gene Family AT3G54790 32.734 8.61e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02985 - - gmx:100778534 534.258