Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02981 ATGGAATCACCCGGTAACGACCATGTAGTGGGTGGCGGCGGAGAACCCAACGATGTCGTTAGATCCTTTTCCCACAGAGAAGAACACGAGCAACACCACAACAACTCCCAACCTCTTACCGGCGACGGTGCCAGTCCCGGGAAAAAGGGGGTTTTAATTGTTATATGTGTTGTTAGATTAGATGTTAATATTCTTAGATTTGGTTCTAATTGTACTCGACCCCATAATTTGCAGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACATATGCAGATCCCTCTGTAGTTGATAAAGTCATTGAGGACTCTCACATCATCAATGGCAAACAAGTTGAAATTAAGCGGACAATACCACGGGGAGCTGTTGGCTCTAAGGATTTTAAGACAAAGAAAATTTTTGTAGGTGGGATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTTTTCACACGATATGGAGAAGTCAAAGATCATCAAATAATGCGGGACCACTCCACCAATCGATCTCGTGGTTTTGGGTTTATCACCTTTGACTCTGAGGAAGCTGTTGATGATCTTCTATCCATGGGAAACAAGATTGAGTTCGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCAGCTACATTATCCAAGCGCTATAATGAGTCAAGGTCTTCATACAGCAGTGGTGGTTACGGAGAAGCTTATGATGGATTTGGCGGTGGCTTTGGTGTTGGTGGTGGTTACAGGTCAGGTGGTGTCTATGGTGGAAGGGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTACAGAGGAGATCCTTCCCTTGGGTTTGCTGGTCGTTATGGTGGAGGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCAAGTGAGAATTATGGGGCATATGGTGGTGGTGCTGGTGGTGGTGGTTCTTCTGGCAGTGGTGCCTATCAAAGTGGCTATGATGCCAGCCTAGGGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGAAGTAGAGGAGGATATGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1158 0.4655 MESPGNDHVVGGGGEPNDVVRSFSHREEHEQHHNNSQPLTGDGASPGKKGVLIVICVVRLDVNILRFGSNCTRPHNLQKDIYRWFSERNDHWKTGQPRGFGFITYADPSVVDKVIEDSHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNPPATLSKRYNESRSSYSSGGYGEAYDGFGGGFGVGGGYRSGGVYGGRGGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGGFSRGYDLGGYGGPSENYGAYGGGAGGGGSSGSGAYQSGYDASLGGGYGGASGGSFYGSRGGYGAGRYHPYGR. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02981 385 FunFam Heterogeneous nuclear ribonucleoprotein 1 136 259 - -
Seca10g02981 385 MobiDBLite consensus disorder prediction 1 20 - -
Seca10g02981 385 Gene3D - 61 136 IPR012677 -
Seca10g02981 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Seca10g02981 385 MobiDBLite consensus disorder prediction 25 44 - -
Seca10g02981 385 MobiDBLite consensus disorder prediction 220 239 - -
Seca10g02981 385 SUPERFAMILY RNA-binding domain, RBD 133 231 IPR035979 GO:0003676
Seca10g02981 385 SMART rrm1_1 64 129 IPR000504 GO:0003723
Seca10g02981 385 SMART rrm1_1 146 219 IPR000504 GO:0003723
Seca10g02981 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 215 IPR000504 GO:0003723
Seca10g02981 385 Gene3D - 145 228 IPR012677 -
Seca10g02981 385 SUPERFAMILY RNA-binding domain, RBD 92 135 IPR035979 GO:0003676
Seca10g02981 385 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 93 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02981 Seca-Chr10 40225180 40228926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02981 94 255 Eukaryotic Initiation Factors Gene Family AT4G34110 29.412 1.28e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02981 K12741 K14314 gmx:100793209 404.445