Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02969 ATGGCCTTGCTGTATGGTTCAGCTTCGGTGGTGACCTTCCCTTCATCTTCATTCTCTCTTCACAAGAATGCAACAACAAAATCATCCTTTTCTGGCTTGCCACTACCAAAGCTTTCATTATCTTCATCTTCTTCTATTCGTTCCCGTTTACCTGCAGCTTTCCGTGTCCATTGTCAGCAGGACTCTGTCTCCGTCGTCCCACAAGAACAAGTACAAGAACAAGATCCACGCTTCATGTGCGTCGAACCCGAGCCCCGATTCAAAGGCCCGGACGTTTGGAACAAGACCTATTATCCAAAAGCTGCAGATCATGTCAATACAGAGAAAACATGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCTATTCACATCCGAGGGAAAAACCTAGTGACCTATACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTAAATGCAGAAAAGGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCACTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTGCCCAGCTGCAGAACAGAATTCCTGAAAGAATCATTGAGCATGCTGTTAGGGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAGACTATTCACCCACCTAAAGGTTTATAGCGGTCCAGATCATCCACATGCGGCACAGAAGCCCATTGATTTGCCAATAAGGGATAAGAGAATACAGTTGGAGAGATAG 744 0.453 MALLYGSASVVTFPSSSFSLHKNATTKSSFSGLPLPKLSLSSSSSIRSRLPAAFRVHCQQDSVSVVPQEQVQEQDPRFMCVEPEPRFKGPDVWNKTYYPKAADHVNTEKTWYIVDATDKILGRLASTIAIHIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYSGPDHPHAAQKPIDLPIRDKRIQLER. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02969 247 ProSitePatterns Ribosomal protein L13 signature. 201 223 IPR023563 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 CDD Ribosomal_L13 111 224 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 PANTHER RIBOSOMAL PROTEIN L13 100 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 SUPERFAMILY Ribosomal protein L13 105 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 Gene3D Ribosomal protein L13 95 243 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 FunFam 50S ribosomal protein L13 94 238 - -
Seca10g02969 247 NCBIfam 50S ribosomal protein L13 105 236 IPR005823 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 Hamap 50S ribosomal protein L13 [rplM]. 111 246 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca10g02969 247 Pfam Ribosomal protein L13 109 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02969 Seca-Chr10 39893958 39897126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02969 113 246 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.787 1.25e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02969 K02871 - gmx:100305981 369.392