Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02961 ATGGCCTCTTCAAATTCTCCATGTGCTGCTTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGTGTTTTTGCGCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTTAGCAAAATCCTGAATGAAGTGTTACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAAGCAAGGATTAAAGATCCTGTCTATGGCTGTGCTGGGGCCGTTTCAGTGCTTCATAGACAAGTCCTTAGGCTCCAAAAGGAACTTGATTCCACTAATGCAGATTTGATGCGCTTTACTACTTGTAATCAACTTTCAACTCATCATCAAGGTGCAGCTGCTGCAGGGAGAAGGAATATTGAAGGACCTGCTGCTTCCTACCCTTCTCTTGGAGGACACTCTCCTGCTTTTAATTACTATTGGAACAATGATCCTTGTGGGGATGCCTACCACAGAGGTGATATATAA 501 0.4391 MASSNSPCAACKFLRRKCMPDCVFAPYFPPEEPQKFANVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCAGAVSVLHRQVLRLQKELDSTNADLMRFTTCNQLSTHHQGAAAAGRRNIEGPAASYPSLGGHSPAFNYYWNNDPCGDAYHRGDI. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02961 166 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca10g02961 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
Seca10g02961 166 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02961 Seca-Chr10 39796797 39797297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02961 4 129 AS2 family AT3G27650 77.778 1.72e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g02961 LOB 5.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02961 - - gmx:100306630 245.358