Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02958 ATGAGAATATTTGGAGCAATAGGTAGTGGTGCTAGTAGTGTTGTGCAGAGAGCTATGCATATACCAACTCATAGGATTCTAGCATTAAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTATGTGAAGCACCTTGTTATCAGGGTCTTGTAGAATTTCATGGGGCATTTTACACTCCAGACTCTGGACAGATAAGCATAGCTTTAGAATACATGAATGGAGGATCACTTGCAGATATCTTGCGAATACATAGAAGGATACCTGAACCTATTCTATCATCTATGTTTCAAAAGCTCCTACATGGTCTAAGCTATCTGCATGGAGTCAGCCATTTAGTTCACAGAGACATAAAGCCTGCCAATTTACTTGTTAATCTGAAGGGGGAGCCAAAAATCACTGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAATGGCAATGTGTGCTACATTTGTCGGAACTGTTACATACATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCAGCTGATATTTGGAGCCTTGGTCTTGCACTTCTTGAGTGTGGGACAGGAGAATTCCCATATACAGCTAATGAAGGTCCGGTCAATCTTATGTTGCAGATCCTGGATGACCCATCACCATCACCATCAAAACAGAAGTTTTCACCTGAATTCTGCTCCTTTGTTGATGCTTGCTTACAGAAGGATCCAGATACTAGGCCAACAGCAGAGCAGCTTCTTTTGCACCCCTTTATCACAAAGTATGAGACTGCCAAGGTAGATTTAGCAGGATTTGTTCGTAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGATATGTTGACAATACATTATTACTTACTATTTGATGGATCTGATGATTTGTGGCAACATACAAGGAGCTTATACAACGAAAACTCAATTTTCAGTTTCTCTGGGAAACAACATGTTGGTCCAAACAATATATTTACTACTTTATCAAGTATTCGAACTACACTAGTTGGTGACTGGCCTCCTGAAAAGTTGGTGCATGTGGTTGAGAGGCTTCAATGTCGTGCTCATGGTGAAGATGGAGTTGCAATCAGGGTATCAGGATCCTTTATAATTGGTAATCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGCTTGCCAAACTTTAAGGATCTTGGAATTGATATTCCTAGCAAGCGAATGGGTACATTTCATGAACAATTCATCGTGGAACCAACCAGCCATATTGGATGCTACACCATAGTTAAACAAGAACTGTACATTAACCAGTAA 1311 0.402 MRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMNGGSLADILRIHRRIPEPILSSMFQKLLHGLSYLHGVSHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDPDTRPTAEQLLLHPFITKYETAKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGSDDLWQHTRSLYNENSIFSFSGKQHVGPNNIFTTLSSIRTTLVGDWPPEKLVHVVERLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIPSKRMGTFHEQFIVEPTSHIGCYTIVKQELYINQ. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02958 436 Gene3D Transferase(Phosphotransferase) domain 1 77 272 - -
Seca10g02958 436 FunFam Mitogen-activated protein kinase kinase 3 281 435 - -
Seca10g02958 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca10g02958 436 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 3 315 - -
Seca10g02958 436 SMART serkin_6 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02958 436 Gene3D - 276 434 - -
Seca10g02958 436 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02958 436 FunFam mitogen-activated protein kinase kinase 3 1 82 - -
Seca10g02958 436 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02958 436 ProSiteProfiles Nuclear transport factor 2 domain profile. 284 434 IPR018222 -
Seca10g02958 436 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Seca10g02958 436 SUPERFAMILY Protein kinase-like (PK-like) 3 306 IPR011009 -
Seca10g02958 436 CDD PKc_MAPKK_plant_like 2 261 - -
Seca10g02958 436 FunFam mitogen-activated protein kinase kinase 3 83 279 - -
Seca10g02958 436 ProSitePatterns Protein kinases ATP-binding region signature. 7 30 IPR017441 GO:0005524
Seca10g02958 436 SUPERFAMILY NTF2-like 282 379 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02958 Seca-Chr10 39737641 39742093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02958 1 436 MAP Kinase Kinase Gene Family AT5G40440 79.358 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca10g02958 Pkinase 1.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02958 K20607 - gmx:100784935 828.55