Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02943 ATGGCCATGGGTAGCACATTGGGAATTCTGTTTTGGATTTTATTAAACAAAATTCATGAATTAATAGCTTATCCTCGCAGGAATAACTCACATGTGATTGAGAGGAGAGAATCTCGATTTGTGGCTACAAGTGTAAGTGATCATGAGAAGGATGGGGAAGGTGCACCATTCGTGGCTACAATTGTAAGGGCAGAGAGGGAACCATATAGGGTTAGAGATGGGGAAGGCGCATCATTATATCCTTTTGATCGAAGAGCTGGACTTGCTAGGCTAGCAATGAGAGCCTTGCCTCCTATTAAAATCTTTAGAGGAGAAAACACTATGAGGTCCAAATGTGATTGTCCTATTTGCAAGGAAGAATTCAAGAATGAGGAGTTGATTCAACCTTTTAGAGTGTGCCTACATGAATTCCATTTGTCTTGCATTAACTCTTGGTTACATGGTAGAAACATTACTTGTCCTGTTTGCCGTAGGAATTTGCTAGCAACAAATCTCTCCTTAAGGTACGTATGA 513 0.4055 MAMGSTLGILFWILLNKIHELIAYPRRNNSHVIERRESRFVATSVSDHEKDGEGAPFVATIVRAEREPYRVRDGEGASLYPFDRRAGLARLAMRALPPIKIFRGENTMRSKCDCPICKEEFKNEELIQPFRVCLHEFHLSCINSWLHGRNITCPVCRRNLLATNLSLRYV. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02943 170 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 57 158 - -
Seca10g02943 170 SUPERFAMILY RING/U-box 113 161 - -
Seca10g02943 170 ProSiteProfiles Zinc finger RING-type profile. 114 157 IPR001841 -
Seca10g02943 170 Pfam RING-type zinc-finger 114 154 IPR027370 -
Seca10g02943 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 162 IPR013083 -
Seca10g02943 170 SMART ring_2 114 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02943 Seca-Chr10 39608125 39608637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02943 81 167 C3H Transcription Factor Family AT2G27940 33.333 2.97e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02943 - K19041 aprc:113865236 112.849