Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02936 ATGGCATTTGATCCTAACTTTCCAGAAAAACTCTCACTCTTTTTCCCTGAAAACCCCTCTTTTAACCCACAGATTCTGCCCATGATTTCCTCACAAAGCTCTGTTCTCATTCCACCACCACAGAATAACCCTTTGTTGAGTCACTCCAACAATTCGCACCATTTTCAGGGCTATAACCTAAACTTGAATGTGCCAAACCACAACCCTGCTCTTATGATGGAACCTTCCTCTATCATCAACCCATTATATGATATCTCAACCCTTTCCTTGGATGATGATGTCACAATTACACCAAATAACAACCAAATGGATGCTATGCATGGCAACCATGATGAAATCATCTTGGATTTCTCACGATGGACTGTAATTGGAGAGGAACACCCACATATCACTGAAAATGGTGATGATCACAACAGGGATGACTCTGATCATGATGATGATCAAATGGATGAAAATGTGCAAAATGATAGCAACACTACTAACATAATAAAAGGACAGTGGTCACCAAGTGAGGACAAGGCTCTTGTGAATTTGGTGAAACAACATGGATTGAAGAAATGGGCTATAATTGCAAAATCAATGGAGAGAAGGATTGGGAAGCAATGCCGAGAGAGGTGGCACAATCATCTCCGACCAAACATTAGGAAGGATTCATGGACCCTAGAGGAAGACATGATACTGATCAAAGCCCACCAAGAACTTGGAAACAAATGGGCTGAAATTGCAAAAAGAATGCCTGGTAGGAGTGAGAACAACATCAAGAACCATTGGAATGCCACCAAGCGGCGCCAAAACTTCAACAGACAAAATAAGAAGCCTGACACTCGTAAAGGATCACTACTTCGTGCCTACATAAAAATTGTCATTGAAGCTGAAGAAGTCGCTGCATATAAGATGAAGAAATCCATAAGCAACATGGAGATGAAGATGTTGAGAGGTTGCGATGAACATCTAGCTAATCTTTTCTTGGAAATTAATCTATTAAATGATGAAGGTTATGGTCATGAGGTGAAGAAGCAGCACCATATGATCAATGGAAATGGTGGTTACAAGCCAATGCTGCATGGAATCCCAAATGGGTCTGTGAACATTGACTATGGTGCAATGGTGAAAAGGTTGGGGCTTGAAGATGAGAAGAAGGGGTAG 1146 0.4119 MAFDPNFPEKLSLFFPENPSFNPQILPMISSQSSVLIPPPQNNPLLSHSNNSHHFQGYNLNLNVPNHNPALMMEPSSIINPLYDISTLSLDDDVTITPNNNQMDAMHGNHDEIILDFSRWTVIGEEHPHITENGDDHNRDDSDHDDDQMDENVQNDSNTTNIIKGQWSPSEDKALVNLVKQHGLKKWAIIAKSMERRIGKQCRERWHNHLRPNIRKDSWTLEEDMILIKAHQELGNKWAEIAKRMPGRSENNIKNHWNATKRRQNFNRQNKKPDTRKGSLLRAYIKIVIEAEEVAAYKMKKSISNMEMKMLRGCDEHLANLFLEINLLNDEGYGHEVKKQHHMINGNGGYKPMLHGIPNGSVNIDYGAMVKRLGLEDEKKG. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02936 381 CDD SANT 218 261 IPR001005 -
Seca10g02936 381 ProSiteProfiles Myb-like domain profile. 211 261 IPR001005 -
Seca10g02936 381 FunFam Transcriptional activator Myb isoform A 163 216 - -
Seca10g02936 381 Pfam Myb-like DNA-binding domain 216 258 IPR001005 -
Seca10g02936 381 Pfam Myb-like DNA-binding domain 164 210 IPR001005 -
Seca10g02936 381 Gene3D - 217 281 - -
Seca10g02936 381 PANTHER MYB PROTEIN-RELATED 145 274 - -
Seca10g02936 381 SUPERFAMILY Homeodomain-like 161 257 IPR009057 -
Seca10g02936 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 215 265 IPR017930 -
Seca10g02936 381 CDD SANT 167 210 IPR001005 -
Seca10g02936 381 ProSiteProfiles Myb-like domain profile. 159 210 IPR001005 -
Seca10g02936 381 Gene3D - 163 215 - -
Seca10g02936 381 MobiDBLite consensus disorder prediction 128 164 - -
Seca10g02936 381 MobiDBLite consensus disorder prediction 128 144 - -
Seca10g02936 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 214 IPR017930 -
Seca10g02936 381 SMART sant 163 212 IPR001005 -
Seca10g02936 381 SMART sant 215 263 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02936 Seca-Chr10 39533710 39536681 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02936 151 288 MYB Transcription Factor Family AT5G58850 51.333 3.89e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02936 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02936 K09422 - ccaj:109801641 264.618