Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02934 ATGATACTTATCAAAACCCACCAAGAACTTGGAAACAAATGGGCTGAAATTGCAAAAAGAATGCCTAACAGCAGTGAGAACGACATCAAGAACCATTGGAATGCCACCAAGCGGCGCCAAAACTTCAACAGACAAAATAAGAAGCCTGACACTCATAAAGGATCACTGCTTCATGCCTACATAAAAGCCGTCACTGAAGCTGAAGAAGCCGCTGCATATAAGATGAAGAAATCCATAAGCAACATGGAGATGAAGATGTTGAGAGGTTGCAATGAACATCTAGCTAATCTTTTCTTGGAAATTAATATATTAAATGATGAAGGTTATGGTCATGAGGTGAAGAAGCAACACCATATGATCAATGGAAATGGTGGTTACAAGCCAATGCTGCATGGAATCCCAAGTGGGTTTGTGAACATTGACTATGGTGCAATGGTGAAAAGGTTGGGGCTTGAAGATGAGAAGAAGGGGGAGATGGATTTGATAGAAGTGGGAACAGTAAAGTTCTAA 510 0.4059 MILIKTHQELGNKWAEIAKRMPNSSENDIKNHWNATKRRQNFNRQNKKPDTHKGSLLHAYIKAVTEAEEAAAYKMKKSISNMEMKMLRGCNEHLANLFLEINILNDEGYGHEVKKQHHMINGNGGYKPMLHGIPSGFVNIDYGAMVKRLGLEDEKKGEMDLIEVGTVKF. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02934 169 PANTHER MYB PROTEIN-RELATED 2 55 - -
Seca10g02934 169 CDD SANT 2 37 IPR001005 -
Seca10g02934 169 Gene3D - 1 55 - -
Seca10g02934 169 SUPERFAMILY Homeodomain-like 2 41 IPR009057 -
Seca10g02934 169 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 41 IPR017930 -
Seca10g02934 169 Pfam Myb-like DNA-binding domain 2 34 IPR001005 -
Seca10g02934 169 ProSiteProfiles Myb-like domain profile. 1 37 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02934 Seca-Chr10 39480543 39481052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02934 2 64 MYB Transcription Factor Family AT4G18770 57.143 6.68e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g02934 Myb_DNA-binding 2.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02934 K09422 - ccaj:109801641 107.842