Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02928 ATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCAAGAATTTCTTGTGCATGTTTGTATGGAGGTGCGCCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCTGATATTGTGGTAGCCACTCCTGGCCGGTTGAATGATATTCTTGAGATGAGGAGAATCATCAGTCTTCATCAGGTCTCTTACCTTGTGCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCCCGCAGGCAAACTCTCATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTATTGGCACCAATGGAGAAACACCGACGACTGGAAAATATTTTGCGATCACAGGATCCAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTTCACGCCAGTTTGGCGCTGCTGCTATTCATGGGGATAAATCTCAGGCTGAGAGGGATCATGTTTTGAATCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGACATCAAAGACATTAGGGTGGTTGTCAACTACGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTGTAGCTTACACTTTCTTTGGGGATCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTCCCTCCAGAAATTCGTGATATGTCATCACGGGGTGGTGGGATGAGCAGATCCAGACGATGGGGTTCTGGCGGCCGTGGTGGACGTGGTGACTCTGGATTTGGTGCAAGGAATTATGACTCTGGATATGGTGGAAGGGGTAATGATGCAGGATATGGTGGAAGGGGTAGTGATTCAAATCACGGAGGAAGGGGTGGGTGGGGGACTGCTCCTGGTAGAGGTGGAGGCCGTGGATTTGATTATGACTCAGAGAGGAATGATCGTGGTCGAAGCCCTGAGAGGGGATCTAGTTGGAGCGATCGCTACAAAAGTGTCAATCGTGATCGCAGCCGAAGTCGTAGTCCTGACAGGGCTGCACCACCTCAACATGCCCAAGTCAGCTTTCACAAAGCAATGATGGATCGCAGTGGAGGTGATGGTGATCGCAACAGGAGCTTTAACCGGGATCGAAGCCGTAGTCCTAGTCCTTATAAACAGGAGAGGGCCACAACAGTTCGGGAACGATCCCCAGTTCATAGCTTTCATCGATCAATGATGGGACAAGGTCAATCATCCTCTTCATCTCAACGGCAGCGTAGCCCTCATAATGAGAGTTGTAAAGAGGAAAAAGGTCATGGATATGCTCGTAGTCCTCACCAAAGCTCACCATCCTCCCCTGGTGGTGGTAGGACCAATAATAGTCCTCAGAAAGAGTGGGGGGGATCTTCAGGTGATGTGAGATATGGTGGATCTCACCCTTCTTACAATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAGGTCAAGATGATGCCATATATCAAAGTGTGGATTAG 1728 0.4786 MGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRIISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLENILRSQDPGSKIIIFCSTKKMCDQLARNLSRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGANQRVPPEIRDMSSRGGGMSRSRRWGSGGRGGRGDSGFGARNYDSGYGGRGNDAGYGGRGSDSNHGGRGGWGTAPGRGGGRGFDYDSERNDRGRSPERGSSWSDRYKSVNRDRSRSRSPDRAAPPQHAQVSFHKAMMDRSGGDGDRNRSFNRDRSRSPSPYKQERATTVRERSPVHSFHRSMMGQGQSSSSSQRQRSPHNESCKEEKGHGYARSPHQSSPSSPGGGRTNNSPQKEWGGSSGDVRYGGSHPSYNGEEEEGMIPDEEGMIGQDDAIYQSVD. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02928 575 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 309 - -
Seca10g02928 575 MobiDBLite consensus disorder prediction 378 416 - -
Seca10g02928 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 136 IPR014001 -
Seca10g02928 575 SMART ultradead3 2 153 IPR014001 -
Seca10g02928 575 CDD SF2_C_DEAD 150 279 - -
Seca10g02928 575 MobiDBLite consensus disorder prediction 476 493 - -
Seca10g02928 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 165 309 IPR001650 -
Seca10g02928 575 FunFam ATP-dependent RNA helicase RhlB 140 312 - -
Seca10g02928 575 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 82 90 IPR000629 -
Seca10g02928 575 Gene3D - 1 140 IPR027417 -
Seca10g02928 575 MobiDBLite consensus disorder prediction 510 533 - -
Seca10g02928 575 MobiDBLite consensus disorder prediction 494 508 - -
Seca10g02928 575 MobiDBLite consensus disorder prediction 434 473 - -
Seca10g02928 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 287 IPR027417 -
Seca10g02928 575 Gene3D - 141 311 IPR027417 -
Seca10g02928 575 Pfam DEAD/DEAH box helicase 2 125 IPR011545 GO:0003676|GO:0005524
Seca10g02928 575 MobiDBLite consensus disorder prediction 301 575 - -
Seca10g02928 575 Pfam Helicase conserved C-terminal domain 162 270 IPR001650 -
Seca10g02928 575 SMART helicmild6 190 270 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02928 Seca-Chr10 39369292 39372400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02928 5 308 Eukaryotic Initiation Factors Gene Family AT3G19760 34.853 7.19e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02928 K12823 - gmx:100816455 782.326