Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02899 ATGGCATCTCACATAAAAGCTTGGGTATACTCTGAATATGGAAATATAGAAGAGATTCTGAAATTTGATCCTAATGTACCTATACCAGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCACTTAACCCTGTTGATTATAAGAGGGCTCTAGGCTATTTCAAGAACACTGACTCTGCTTTACCCACTGCTCCAGGGTATGATGTTGCTGGTGTGGTGGTCAGAGTGGGAAGTCAAGTGAGGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAGAATGCTTTGAACCATCCAAAGGCCATTGGGTCTTTGGCAGAGTATACTGCTGCTGAAGAAAAAGTACTTGCTCACAAACCCTCCAATTTGAGTTTTATTGAAGCTGCTAGCCTTCCTTTAGCCATCATTACTGCATATCAAGGACTTGAAAGAGTTGAGTTTTCTGCTGGAAAATCTATACTTGTTCTGGGAGGTGCTGGAGGAGTTGGAACCCTTGTTATTCAGCTCGCCAAGCATGTATTTGGCGCATCTAAGGTTGCAGCTACTGCTAGTACTGCCAAACTGGAATTGTTGAGAAACTTGGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTGCGAGAAAAGTTTGATGTGGTGTATGATGCAGTAGGAGGGCAGAGTGACAGGGCTTTGAAGGCTATTAAAGAAGGGGGCAAGGTTGTGACAATATTGACACCTGAAACTCCACCAGCTGTATTCTTCTTACTCACTTCAGATGGGGCTGTGCTGGAGAAATTACAACCTTACTTGGAGAGTGGTAAGGTCACTCAGATTATGGCTTCTCGTATGAAAGCTTGGGTCTACTATGAATACGGGAACATAGAAAATATTCTCAAATTTGATCCCAATGTACCAATACCAGACCTCAAGGAAGACCAGGTGCTCATCAGGGTTGTGGCTGCAGCCATCAATCCTGTTGATTATAAAAGGGCTCTGGGGGTTTTTCCCCATTTTGCTTTGTTTGATTTTGTGTTGTGTTTGGTGGTGGAAACTGGAAAGACTGTTCCTGGGTTTGATGTAGCTGGTGTAGTGGTCAGAGTGGGAAGTCAAGTGAGGAAATTTAAGGTTGGGGAAGAAGTTTATGGTGATATCAATGAACATGATGTGAACTATCCAAAGACCATTGGGTCTTTGGCAGAGTATACTGCTGCTGAAGAAAAAGTATTGGCTCACAAACCCTCCAATTTGAGCTTTATTGAAGCTGCTTGCCTTCCTTTAGCAATAATCACTGCTTATCAAGGACTTGAAAGAGTTGAGTTTTCTGCTGGCCAATCCATACTTGTTCTGGGAGGTGCTGGTGGACTCGCCAAGCATGTATTTGGTGCATCTAAGGTTGCAGCTACTGCCAGTACTGCCAAACTGGAATTGTTGAGGAACTTGGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTGCCAGAGAAGTTTGATGTGGTGTATGATGCAGTAGGGCAGAGTGACAGGGCATTGAAGGCTGTTAAAGATGGGGGCAAAGTTTTGACAATAACTGATCCACCTGGAGATCCACCAGCCATCCCATTCTCACTCACTTCAGATGGGGCTGTGTTGGAGAAACTACAACCTTACTTGGAAAGTGGTAAGGTGAAGCCCATACTTGATCCCAAGAGCCCCTTTCCATTTTCTCAGACTGTAGAAGCTTTTTCCTACCTCAAGACTAATAGAGCCACTGGGAAAGTAGTTATATATCCCATCCCTTAA 1800 0.4344 MASHIKAWVYSEYGNIEEILKFDPNVPIPDIKEDQVLIKVVAAALNPVDYKRALGYFKNTDSALPTAPGYDVAGVVVRVGSQVRKFKVGDEVYGDINENALNHPKAIGSLAEYTAAEEKVLAHKPSNLSFIEAASLPLAIITAYQGLERVEFSAGKSILVLGGAGGVGTLVIQLAKHVFGASKVAATASTAKLELLRNLGADLPIDYTKENFEELREKFDVVYDAVGGQSDRALKAIKEGGKVVTILTPETPPAVFFLLTSDGAVLEKLQPYLESGKVTQIMASRMKAWVYYEYGNIENILKFDPNVPIPDLKEDQVLIRVVAAAINPVDYKRALGVFPHFALFDFVLCLVVETGKTVPGFDVAGVVVRVGSQVRKFKVGEEVYGDINEHDVNYPKTIGSLAEYTAAEEKVLAHKPSNLSFIEAACLPLAIITAYQGLERVEFSAGQSILVLGGAGGLAKHVFGASKVAATASTAKLELLRNLGADLPIDYTKENFEELPEKFDVVYDAVGQSDRALKAVKDGGKVLTITDPPGDPPAIPFSLTSDGAVLEKLQPYLESGKVKPILDPKSPFPFSQTVEAFSYLKTNRATGKVVIYPIP. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02899 599 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 155 176 IPR002364 GO:0008270|GO:0016491
Seca10g02899 599 Gene3D - 293 595 - -
Seca10g02899 599 Pfam Zinc-binding dehydrogenase 483 595 - -
Seca10g02899 599 SUPERFAMILY GroES-like 283 451 IPR011032 -
Seca10g02899 599 Pfam Alcohol dehydrogenase GroES-like domain 34 97 IPR013154 -
Seca10g02899 599 Pfam Alcohol dehydrogenase GroES-like domain 315 388 IPR013154 -
Seca10g02899 599 Gene3D - 12 285 - -
Seca10g02899 599 CDD MDR_like_2 6 279 - -
Seca10g02899 599 SMART PKS_ER_names_mod 295 595 IPR020843 GO:0016491
Seca10g02899 599 CDD MDR_like_2 286 595 - -
Seca10g02899 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 128 255 IPR036291 -
Seca10g02899 599 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 282 599 IPR044626 GO:0016628
Seca10g02899 599 Pfam Zinc-binding dehydrogenase 166 247 IPR013149 -
Seca10g02899 599 SUPERFAMILY GroES-like 5 162 IPR011032 -
Seca10g02899 599 Gene3D - 438 546 - -
Seca10g02899 599 Gene3D - 147 262 - -
Seca10g02899 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 419 540 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02899 Seca-Chr10 38420615 38430648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02899 58 249 Monolignol Biosynthesis Gene Families AT1G72680 26.126 8.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02899 K18980 - gmx:100791274 462.611