Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02888 ATGGATAAGTTTGATTTTGAATCAACCTTTAACATGGATAAAGATAAAGATCCAGTGTTTGACTGTAGTATTGATGATAGTCTTAGTAGTGGAGAGGTTGTTGAGCTGTCTAAGAAGAATGAAAAACATGAGACTGATGTAGGTGATGGTGAATGTAAAAGGATGTTTGAGTTGTCAGTATATGAAATGTTGTCCAAAGAGTTTGCTAGTGAAGAAGAGGCATATGAATTTTATAAGTTATATGCGAGACATCATGGTTTTGTGGTTAGGAAAGATGATGTAACCAAGGATCTTTGGGGTAATCATATAATGCGACAATTTGTTTGCAATAGGGAGGGTTTAAGGAACAAAAAGCACTTTATGAGGGTGGATAGGAAGAGAGAGCATAGACCATTGACTCGTACAAATTGCCTTGCTAAGCTTCGTGTACACTACCATCACAAGAGTTTAAAGTGGACGGTAGTGCCATTTGAGCAGTGTCATAACCATGAGCTTGCCCCATCTAGATTTACACACCTACACCCTGCTTATCGTGGTATGTCCGCTACGGATAAGGCGCAGGTTGATAGTTTGCATGCATATGGGGTACCTAGTGGCTCAAAAAGGGGGATATGGTCGGGTTGGCTTTTCAAAGAAGGACATGTATAA 648 0.3981 MDKFDFESTFNMDKDKDPVFDCSIDDSLSSGEVVELSKKNEKHETDVGDGECKRMFELSVYEMLSKEFASEEEAYEFYKLYARHHGFVVRKDDVTKDLWGNHIMRQFVCNREGLRNKKHFMRVDRKREHRPLTRTNCLAKLRVHYHHKSLKWTVVPFEQCHNHELAPSRFTHLHPAYRGMSATDKAQVDSLHAYGVPSGSKRGIWSGWLFKEGHV. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02888 215 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 32 197 - -
Seca10g02888 215 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02888 Seca-Chr10 38201663 38202310 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g02888 FAR1 4.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02888 - - ccaj:109792835 201.06