Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02886 ATGAGAGCCTTGCCTCCTATTAAAATCTTTAGAGGAGAAAACACTATGGGGTCCCAATGTGATTGTCCTATTTGCAAGGAAGAATTCAAGATTGGGAAGTTGATTCAACCTTTTAGAGTGTGCCTACATGAATTCCATTCGTCTTGCATTAACTCTTGGTCACATGGTGGAAACATTACTTGTCTTGTTTGTCGTAGGAATTTGCTAGCAACTAATCACTCGTTAAGGTACATACGATATGAAGGTTGTGTTGTTTTATGTTTGTTCTGTTTTGAGTGA 279 0.3799 MRALPPIKIFRGENTMGSQCDCPICKEEFKIGKLIQPFRVCLHEFHSSCINSWSHGGNITCLVCRRNLLATNHSLRYIRYEGCVVLCLFCFE. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02886 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Seca10g02886 92 Pfam RING-type zinc-finger 22 61 IPR027370 -
Seca10g02886 92 ProSiteProfiles Zinc finger RING-type profile. 22 65 IPR001841 -
Seca10g02886 92 SUPERFAMILY RING/U-box 18 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02886 Seca-Chr10 38193224 38193502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02886 18 75 C3H Transcription Factor Family AT2G18650 39.683 2.46e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02886 K11982 - aprc:113865236 97.8265