Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02879 ATGGAGTCTGGACGTCTTTATTTTGATACCTCTGCTTGTCGTGGGAACAACATGAACATGCTCTTCCTCGGGAATGCTGCTGATCTTGGTTTTCGAGGAAGGTCGATGATGAGCATGGAGGAAGGCTCAAAGAGGCGACCTTTCTTCAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAGGAGCAGTTGCCGGAAAAGAAACGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGGCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGCAGGGCTAGATGGAAGACCAAGCAACTTGAGAGGGATTATGATGTTCTCAAGGCTTCCTATGATACCCTACTTTCAACATATGATTCCATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTAGTGGCATCCTTAAATGAGAAGCTTCAAGTTGAAGCTAAAGAGATGCCAGGGGAGCCATTATCAGACAAGAAAGATGATCCACTTCCAGTAGATATAGCTCAAATTTTCAGCATGAAGGTGGAGGACCACATGAGTTCTGGAAGTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCCCAGCTTGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGATAATTATGTGGCCCCAGTTCAGACTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTAGATGTGTTTGTGGCATCTGAAACTGAGCAGCAAAACCATGAGGAGGGAGAGGCATTGAATTGGTGGGGTAATATGTATTATGTTGCATAA 849 0.4711 MESGRLYFDTSACRGNNMNMLFLGNAADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQLPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDTLLSTYDSIMKENEKLKSEVVASLNEKLQVEAKEMPGEPLSDKKDDPLPVDIAQIFSMKVEDHMSSGSVGSAVVDEGSPQLVVDSVDSYFPADNYVAPVQTQSEEEDGSDDGRSYLDVFVASETEQQNHEEGEALNWWGNMYYVA. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02879 282 SMART HOX_1 66 127 IPR001356 GO:0003677
Seca10g02879 282 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Seca10g02879 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 222 IPR045224 GO:0003700
Seca10g02879 282 CDD homeodomain 68 124 IPR001356 GO:0003677
Seca10g02879 282 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Seca10g02879 282 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Seca10g02879 282 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Seca10g02879 282 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Seca10g02879 282 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Seca10g02879 282 Coils Coil 136 156 - -
Seca10g02879 282 Pfam Homeobox associated leucine zipper 123 166 IPR003106 GO:0006355|GO:0043565
Seca10g02879 282 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Seca10g02879 282 Gene3D - 61 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02879 Seca-Chr10 38005032 38008204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02879 1 276 Homeobox Transcription Factor Family AT3G01470 60.498 1.01e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g02879 Homeodomain 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02879 K09338 - gmx:100797836 441.81