Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02878 ATGGATTTCCCTCTTGGAATTCATAGTAATAGTAATAATACAGCTATTAGAATACCATCCCGGAGTCCAAATGAGATATTTTTGCAGGCCCTAAGAGATTTTATATCTGAAAGGCGCGGTGTACTAGAGGAAGGTTGGCGGGTGGAATTTAGACAATCAGTGAGCAGCTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGGCTAACGTCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAAAGGTCTCTGCCTTCTTTAGGTGGGCCTCACATGTCCAGAAAAAGAAAGTCAGGAAAAACTTTAGTAGCCAATGGTTTTGCTGAAAAGTGTGGAACCTTGATCAACAGTAATTGTAAGGATACTCCTTCTGATGGTTTAAGTGTAGAATGTGCTAGTGCTCAGGGGAATGCCCCAGAAGCCACTGAAATTGGAAGACAAGATGATGGTCATACTGGCCCTCAGCAATCTGCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAGCTTGATGGGAGACCTTCATATTATGACGTTAACCTTATCTTTCCTGTAGGTTATAAATCTTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAGGTTTTGGAGGGTGGTGATTCTGGACCCATATTTAGGATCAGAAGGTGTTCCTGTTCAGAATTTCTTGTTCCTGTTGGGTCAACCATCCTCTCAGTATCAAATCTTTGTCAGTCTGTCAGTCAAACCAATGAAAAAGGTGAGAGAAAGACTGATGATAGTATGGGTTTAGATGGTGATGAAAGTATCCAGATGATGCTTTTAGACCCTTGTGCCCCAACGGAAAATGACGTCTTAAGTTGTGTTGCAAGTTTCTCAAATGAAGCATGTGATGATACTCATACATCAGATGTATTACAGCCTGTTGCCGGTTCTGTTCAAGATAATGCTAGAAATTTGTTAGCTGATAACATAGGGTTTATTGATGGAATTGGTGAAATTTTGGTGGAAGAACGGTCATCATCCTCTGCTTGGAGTGTTATGTCTCAAAAGTTAGTTAATGCTTGCAAAGATATCTGCAATCAGAAAGGAACTCTCAAATTCTATTGTAAACATGCTGAAAATGAAACATGCTTACATAAGTGGGATTTAAGGAATGGAAAAAGTGATACCCACTTTACTTCGTTGGATAAATTTTTTGGTTCACTTGGTTCAGTCAGCATCCCGGATGTAATTTATGCAGACAATGATCTGAAAGGTCTCTATGAGATGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTAGAACAGCTTCCTGGTATCCAAGACTCTCTGCAGTATGAACTTCTGAATAGTAGAAGTAATAGCTCTTCATTGCCGACTGTAGAAAATGGTTTCCTAGTGGTTGAATGGAGAGGCGGATCAAAATACCAGGAAGAAGAAGCAGCTCAATGTTTATATGGGCCCAAGAAGGTGAAGTCAACTGAAAAATGCATTAGGGAAGATCGTTGTCCACCTCCTGGGAAGCCACTATGCTCTAGGGCTCCCAGTGAACTCATTGGTGACATTTTCCAGGCTTGGGAGCTTTTAGGGCGATTTCATGAAATTCTGGATCTGAAGGAATCATTGTCATTGAATGAGCTTGAAAAGGAACTTATCAACCCATGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAAGGAAATGGATAGTAGTCAGGTTTTAAGTTCACAAGGAGCTGATGGTAATTGCAGACCACTGTCCTCAAGATGTGAAGCTGGTCCATCAGGTTCCACAGAAAGTTCCCATGCTTTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCTTCTTTCACTTATGCCAGATGCTTTGGTGTAGCCTTGACCAAGGCTCATAATTCATTACTAAGGGTGCTCATAGGTGAACTGCAATCAAAGGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGAAAAGATATAGATAGTTCAGCTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAACTGACTTGGCCAGAATTAGCTCGTAGATATATCTTGTCTTTTTTATCAATGGATGGTAAGCTCGAGTCTGCTGAAATTACTGCTCGTGAGAGTGGTAAAGTATATCGATGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTTCACTTACTGGTGTGGCTGGAATGGAAGCTGATGCACTGTTGCTTGCAGAGGCTACAAAGAAGATTTTTGGTTCTTTGAGCAGAGAAAATGATGTACTAACCATGGAAGAAGATGAGTCTGATGCAAAGGGTGCTTCTGAAAAAAATTTGGGGAATGATGGTAATATTCCTGAATGGGCACAAATGCTGGAACCTGTCAGAAAGCTACCAACAAATGTTGGAACCCGAATCAGAAGGTGTGTTTATGATGCTCTGAGTAAGGATCCGCCTGAGTGGGCAAGAAAAATACTGGAGCATTCAATTAGCAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTGCTTTCAGTGTTGGCTGATGTAGTTGGTGAAGGAATGCAGTCGAATCCCAATAAAGGAAGGAAAAAGAAGATTGTTATATCTATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTAATAAATTCTTCCGATAATGATGATGAAGGGCTTCTTGGATCTCCAGCTATGGTGGCTCGTCCTCTTGACTTCCGGACTATTGATCTAAGATTGGCCTCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTCGAGGACATGCGTGAGCTATGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGATCTGGCTGAAAAGTTGTCCCAGAATTTTGAATCGTTATACAATGAGGAGGTGATCACTTATGTTAAAAAATTTGGGGAGTATGCTAAACAGGAGTGCTTAAGTCCAGAAATGAAAAAAGAAGTTGACAGTTTTATTGTTTCAACAAGTGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACGTATTGTTTGAACCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTCTTGATGGTAAACGTGCAACTCAAGATGTTACAGAACGTCCACAGATTATTGGCAAGCGCCGAAGTAAAAAAATCCAGGGAGAAGTTAATTGTCTTTACTTGGAAGCTCTAACTCATTTATCTACTACAATTGAAGAAAAAGAATACTGGGAGTACAGTGTGGGTGAGAGAACCTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCCTCCCTGATACGCCAGCATCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAATCTGAAAGCAAAAGAAGATATTTTATCTACAAAAGCTGCCAAAATTGATACATTTTCACTAAACACCACCGGAGAAGTTGGTTTTAAGGACTCAAATGCTGGTAAATGTCAGGTGCAGGCACACACTGCAGCTGACAATCCTAGTAGTTTTGGGGTATTTGTTGATAGTGTGCCTTCAGAAGAGATTACTGAAGAGAAATATAGGTTCAATAGTGTTGATAAAAGTGTATCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGACAACTTAGGAATGTTTCTTTGGCTGTGGAGTCTCTGTGTACTGATAAATCCCCCAAGTCTTTTCCATCACCAAATTGTTTGCCACAAGACATAAATGGTTCTGTTGGAGCAGCTCATATCCAGGGTAACCACCAGAAATGTGAGGGAAGGGATGTATCTACTCTTGGGACATACCAGCAAGGACAATGTGTGCCTGTTGAAGTTCCTCAGATTGCTGTGAATGAGTCAGAACCCTACCACCTTGAACTCAATGCCATCAGACGTGATATCTCAGTACTGCAGGACTCCATAACTAGCGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCATTGGTCGGCTGTACTGGTCTATGGCTACGCCCCGGGGGCGTTCACGTATAGTTGTTGATGCAAGTTCTGTACTGCCTCATGGAAGAGGAGTAGCAGTTACCAAAGACTCTATGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGACAAGGATAACTATAAGATGTTAGGGATGATCAAGGACTCTCCTTTAATGTCTCAACCAAGTAACGCTTTGGGCAATGGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATTGAAGAACTTTTAGGTTGGCTAAATGATAATGACCCTAAAGAAAGAGAACTGAAAGATGCTGTTATGCTGGGGCCAAAATCAAGATTTCAAGAGTTAGTTAATGTACAGACTGAAAGTCAGGTTGAGGAGCAGGGACCTATTTCTATGCCAACAAATAGAGAGAAAACAGTATCTAATTCTCTTGTTACAAAGGCCACTTCCTTGCTGGAAAAGAAGTATGGTCCCTTCCTTGAGTGGGATACTGTTGAGGTGTTGAAGAAGCAAAGTAAAAAGACCAGATCAACTAATGATGAAAAGTTGTACAGGTGTGAGTGTCTAGAACCTGTATGGCCGTCTAGGAAACACTGCATGTATTGCCACAAAACTGTTTTGGGTGATGTTGAATTTGAGGGACACAATGATGGCAAATGTAATGCAGGTCTTCCGGCTTTGGACAAGAATAAGGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTGAAATGTGATACCTCACATGAAAAATTCAGAGCTGATGCAGAAACTGCTGGAACCTCAATTAATAGATCTTCCAAGCTTAGTTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAACTTCGAAGATATATGTATGAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTACAGATGGTATCCCGTCCTTTGTTCCCTCCATATCTCCTTTTGTTAGTGATTATACACTATCCTCTGCTCAAAAGGATGATAGGGTTGTTGGTGGTGTGTCCAAAGCATCAGAAAGCCAGGGTTCACAGGGAAACACTGATGGAGCAGGCATATGTACTGAAAGGTTAGCTGCAAATGAAAGCAATAATGCAGGAAAATCCAACAAATCATCTTTGGGAGAACAAAGAGATGGAAGGTTTTCTTTTTGTAGTCCTGCTTTAGATATGGGAGTCGATGGCTGCTGTGTGGTCCCTTTGTCTTCCTTGAAACCATTAGTTGGAAAAGTTTCTCATATTTTGAGGCAATTGAAGATTAATCTGCTTGATATGGATGCTGCACTACCAAAAGTGGCTTTAAGACCATCAAAGGCACAGTTGGAGAGAAGACACGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTGCACTGGAGGATATGATTAAGACAGAGTTCTTAAGAAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATGTATGAGAAAATGCCAAATTCAAGTTTTAATGACAGTTCTGAACCTTCTGCCATAGCCGAACAGAAACGACAGACTGCTGTGGATGCAGAGAAATCCAAAGCAAGCCGGAAGTCGAACAGGAAAAGGAAGGAACAAGATGGTTGA 6015 0.411 MDFPLGIHSNSNNTAIRIPSRSPNEIFLQALRDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEIRNERSLPSLGGPHMSRKRKSGKTLVANGFAEKCGTLINSNCKDTPSDGLSVECASAQGNAPEATEIGRQDDGHTGPQQSADGLPLQFKDFFVLSLGKLDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFLVPVGSTILSVSNLCQSVSQTNEKGERKTDDSMGLDGDESIQMMLLDPCAPTENDVLSCVASFSNEACDDTHTSDVLQPVAGSVQDNARNLLADNIGFIDGIGEILVEERSSSSAWSVMSQKLVNACKDICNQKGTLKFYCKHAENETCLHKWDLRNGKSDTHFTSLDKFFGSLGSVSIPDVIYADNDLKGLYEMLGKWLEQDRFGLDVEFVQEVLEQLPGIQDSLQYELLNSRSNSSSLPTVENGFLVVEWRGGSKYQEEEAAQCLYGPKKVKSTEKCIREDRCPPPGKPLCSRAPSELIGDIFQAWELLGRFHEILDLKESLSLNELEKELINPWFDGLDFLEKSEKEMDSSQVLSSQGADGNCRPLSSRCEAGPSGSTESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSSAPAKRTKLNMLPINELTWPELARRYILSFLSMDGKLESAEITARESGKVYRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEDESDAKGASEKNLGNDGNIPEWAQMLEPVRKLPTNVGTRIRRCVYDALSKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLADVVGEGMQSNPNKGRKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDMRELWNNVRVAFGDQPDLVDLAEKLSQNFESLYNEEVITYVKKFGEYAKQECLSPEMKKEVDSFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCLDGKRATQDVTERPQIIGKRRSKKIQGEVNCLYLEALTHLSTTIEEKEYWEYSVGERTFLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALSVEWKNLKAKEDILSTKAAKIDTFSLNTTGEVGFKDSNAGKCQVQAHTAADNPSSFGVFVDSVPSEEITEEKYRFNSVDKSVSVTNSDSDSQNMNSIDVEGQLRNVSLAVESLCTDKSPKSFPSPNCLPQDINGSVGAAHIQGNHQKCEGRDVSTLGTYQQGQCVPVEVPQIAVNESEPYHLELNAIRRDISVLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWSMATPRGRSRIVVDASSVLPHGRGVAVTKDSMEKFSVLQHCALSDKDNYKMLGMIKDSPLMSQPSNALGNGSPWIAYETDAEIEELLGWLNDNDPKERELKDAVMLGPKSRFQELVNVQTESQVEEQGPISMPTNREKTVSNSLVTKATSLLEKKYGPFLEWDTVEVLKKQSKKTRSTNDEKLYRCECLEPVWPSRKHCMYCHKTVLGDVEFEGHNDGKCNAGLPALDKNKDKNGSSKGRGNLKCDTSHEKFRADAETAGTSINRSSKLSSRLIKFSNEESTCPFNFEDICMKFVTNDSNKELVREIGLIGTDGIPSFVPSISPFVSDYTLSSAQKDDRVVGGVSKASESQGSQGNTDGAGICTERLAANESNNAGKSNKSSLGEQRDGRFSFCSPALDMGVDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPKVALRPSKAQLERRHAWRAFVKSAETIYEMVQATIALEDMIKTEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSFNDSSEPSAIAEQKRQTAVDAEKSKASRKSNRKRKEQDG. 2005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02878 2004 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 32 99 IPR001739 GO:0003677
Seca10g02878 2004 ProSiteProfiles Zinc finger PHD-type profile. 1071 1121 IPR019787 -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 686 708 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 598 630 - -
Seca10g02878 2004 SUPERFAMILY FYVE/PHD zinc finger 1059 1122 IPR011011 -
Seca10g02878 2004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1059 1141 IPR013083 -
Seca10g02878 2004 PANTHER OS02G0192300 PROTEIN 10 2000 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1963 1977 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1784 1798 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 691 708 - -
Seca10g02878 2004 CDD Bromodomain 919 1026 - -
Seca10g02878 2004 SUPERFAMILY DNA-binding domain 35 86 IPR016177 GO:0003677
Seca10g02878 2004 Gene3D - 177 290 - -
Seca10g02878 2004 ProSiteProfiles Bromodomain profile. 964 1012 IPR001487 GO:0005515
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1661 1681 - -
Seca10g02878 2004 Gene3D - 915 1036 IPR036427 GO:0005515
Seca10g02878 2004 ProSitePatterns Zinc finger PHD-type signature. 1074 1118 IPR019786 -
Seca10g02878 2004 Pfam Methyl-CpG binding domain 33 86 IPR001739 GO:0003677
Seca10g02878 2004 MobiDBLite consensus disorder prediction 154 173 - -
Seca10g02878 2004 SMART PHD_3 1073 1119 IPR001965 -
Seca10g02878 2004 Pfam Bromodomain 962 1017 IPR001487 GO:0005515
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1558 1579 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 802 823 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1780 1799 - -
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1963 2004 - -
Seca10g02878 2004 ProSiteProfiles FYR domain FYRN motif profile. 176 229 IPR003888 GO:0005634
Seca10g02878 2004 MobiDBLite consensus disorder prediction 1981 2004 - -
Seca10g02878 2004 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1153 1197 IPR028942 -
Seca10g02878 2004 CDD PHD1_Lid2p_like 1073 1118 - -
Seca10g02878 2004 Pfam PHD-finger 1073 1119 IPR019787 -
Seca10g02878 2004 SUPERFAMILY Bromodomain 908 1028 IPR036427 GO:0005515
Seca10g02878 2004 SMART bromo_6 933 1031 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02878 Seca-Chr10 37990513 38003795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02878 3 2004 C2H2 Transcription Factor Family AT3G01460 46.218 0.0 1647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca10g02878 Bromodomain 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02878 K22768 - gmx:100791814 3142.06