Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02875 ATGTTTAGAAAATTTTTAGTCTTTCAGCACATGTTGACAATGGCAGTTATTATATCTTTGGTACTAATATTTGTGGGAATTGTGTTCCTGGTGCTACTTCATGTTTGTTTTTCCGAGTGGTTCTCTAGAAGAGGAGGCAGAGGTTCAATGGCTGAGAGGGGTACTAATGGGGGCAGAAGCATGTCTATCAATGACTTGGAGAAGCTTCCCTGCTATAATTATGTTTCCAAAGACAATACAAACAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCACTACAGGAGATAAGTGCAGATTGTTGCCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTAGATAAATGGCTTCTAAAGACACCAATATGTCCAATTTGCCGATCCAGTGCTGGTTCTCATAGTGGAAACCAAGTTGTAGGTAACAATGACTACTTTATTGAATCTAGGGAGAGCCAAACTGTCACAGGAAGCCAGCCAGATGACAATAGCTTACAGTTAAGAGAGAGCATAGAAAATGGTCCATCCAGAAATGGTGTAGAATTGAGAGAAAATTCAACATTAGGAAGCCCCAACTCTGGTCACAGAGAAGTGGAATTACGAGAGCACCAGACAGGTGCAATGCAATTGGAGATCAGATGA 642 0.4174 MFRKFLVFQHMLTMAVIISLVLIFVGIVFLVLLHVCFSEWFSRRGGRGSMAERGTNGGRSMSINDLEKLPCYNYVSKDNTNSPVDCAVCLENLTTGDKCRLLPMCKHSFHAQCVDKWLLKTPICPICRSSAGSHSGNQVVGNNDYFIESRESQTVTGSQPDDNSLQLRESIENGPSRNGVELRENSTLGSPNSGHREVELREHQTGAMQLEIR. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02875 213 MobiDBLite consensus disorder prediction 151 194 - -
Seca10g02875 213 Pfam Ring finger domain 85 128 IPR001841 -
Seca10g02875 213 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Seca10g02875 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 184 - -
Seca10g02875 213 CDD RING-H2_EL5-like 85 128 - -
Seca10g02875 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Seca10g02875 213 SUPERFAMILY RING/U-box 68 138 - -
Seca10g02875 213 MobiDBLite consensus disorder prediction 151 193 - -
Seca10g02875 213 FunFam RING-H2 finger protein ATL2K 61 134 - -
Seca10g02875 213 SMART ring_2 86 127 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02875 Seca-Chr10 37838462 37839103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02875 58 130 C3H Transcription Factor Family AT1G74410 43.836 1.25e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02875 - K15692 gmx:102667575 240.736