Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02871 ATGCATAAACTCCCAATGGCTTTTCGGAATTGGAACAGAAATGTGTTTCCAAAATCTATCTTGCTTGTTTGCATCTTCATTCTGATCACCACTATGAAATTCGCAACTTCCTTGGCTCAGGAGGCAGGATGCAGCCTTAGAATTCATCTTTCACCCTTGTTGAATGATTCAAGTTGTGGAGCAGCATTTGATGCTTACCTCTATGCACTTGGTCATCGGGCAAATCAAACAGGGAAGGTTTTCTTGGATTCTACTGAGCAAAGAAATTGTCTGTCTATAAAGAGTTTTAAAGATAATACTATTTTTGGTTGTGGAATTGAGAACCTAACAAGTGGTGCTGGTGGATGTTCTGACTTCTTGGTTGCTGATGTTAGGAATAAATTAGGAAATGAGCTTAGAAGTTTGGATGAAAACTGTAAACTTAACACTTCAGGTAACAAGTGGGAACAATCATGTCCTTCCTGCCTGAGAACCTGGAAAACCATAGGAGGGATAGATTCCAGAAAGACCAACATCATAGCTGAAAAAACTGAACCTGATCTTTGTAGAATTGCTATACTTGTGACAATGATAAGCAGGAAAATTGAAAATGAGATATATGTCCACACAGTTCTGAGATGCCTGGGAACACAAGATACTTATGCAGCTGAAAATCAAACCACAGAAGGCAATCAGAAGATGAAGAGTGATGGAGATGATACTGCAGGTATGTGGATTCTGATTGGAGCAATAGTAGGGGTTATTCTGTTAATAGTTATCACTGTATACATCATGCTTCGTAGATATTTCAGATCAGCCCCACCAAAAAACAAAGTAACATTTGGAGACATGTTAAAGAAAACTGCTTGTCCAATAGTTTCTATCAAGGAAGTGTATGCTGCCACTAACCATCTGAATGGAATGAATATCATTGGGGAAGGAACTGCAGGTAAGGTCTATAAAGGCACAATGAAAAATAAACAGGAGGTTGCAGTAAAGCACATAATCAATGATGATGGAAATATAGAAACTTTTGTCAGAGAAGTTACAAGTCTATCTCATGTCAGGCACCCAAATCTTGTTACTTTGCTGGGTTGCTGTGTTGAGGGAGATGAATGTTTTATTGTCTATGAGCTATGTCCCAATGGGAGTCTTTCAGAACAAGTGAATGCATCAGGCAAGAACAAGGTGTTGTCCTGGACACACAGACTAGAAATTGCAATTGATAGTGCTCGAGGTCTTTGGTTTTTACACTCATATCCTGGAGGCTGCATCGTTCACCGTGATATCAAGCCTACAAATATTCTTCTTGGGTCTAAATTTGAGGCAAAGCTATCAGATTTTGGACTGTCTAAAGTTATTGAGGTGGGTGAAACGTATGTTAGTTCAGAAGTGCGAGGAACTTTTGGATATGTGGATCCTGAGTACCAAAGCAATCGCCGTGTGAATTCATCAGGTGATGTTTACAGCTTTGGCATGGTACTTCTACAAATCCTCTCTGGAAAGAAGGTCATAAATTTGAAACTGAAGAAACCAATGTCACTGAGTAAAATGGCAAAAGCACTCACCAGGGATGGCAGCATTACAGAATTTGCTGATCCTAAACTTCAAGGAGATTACTCTGAGGAAGCATTTGATTTTACACTTAAGCTGGCTCTGTCATGCACATCACTCAACCAACATCATCCGTCCATGGAGCAGGTTCTTAAAAAACTGGAAGAGGCCTTATTAATTTCAAAAGGGTGGAAGGTTTCTACTACAGAAACTCCAGAAGACAATGTTTGA 1764 0.3957 MHKLPMAFRNWNRNVFPKSILLVCIFILITTMKFATSLAQEAGCSLRIHLSPLLNDSSCGAAFDAYLYALGHRANQTGKVFLDSTEQRNCLSIKSFKDNTIFGCGIENLTSGAGGCSDFLVADVRNKLGNELRSLDENCKLNTSGNKWEQSCPSCLRTWKTIGGIDSRKTNIIAEKTEPDLCRIAILVTMISRKIENEIYVHTVLRCLGTQDTYAAENQTTEGNQKMKSDGDDTAGMWILIGAIVGVILLIVITVYIMLRRYFRSAPPKNKVTFGDMLKKTACPIVSIKEVYAATNHLNGMNIIGEGTAGKVYKGTMKNKQEVAVKHIINDDGNIETFVREVTSLSHVRHPNLVTLLGCCVEGDECFIVYELCPNGSLSEQVNASGKNKVLSWTHRLEIAIDSARGLWFLHSYPGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEVGETYVSSEVRGTFGYVDPEYQSNRRVNSSGDVYSFGMVLLQILSGKKVINLKLKKPMSLSKMAKALTRDGSITEFADPKLQGDYSEEAFDFTLKLALSCTSLNQHHPSMEQVLKKLEEALLISKGWKVSTTETPEDNV. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02871 587 Gene3D Transferase(Phosphotransferase) domain 1 373 577 - -
Seca10g02871 587 SMART serkin_6 298 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02871 587 ProSiteProfiles Protein kinase domain profile. 298 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02871 587 Pfam Protein kinase domain 302 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02871 587 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 126 567 - -
Seca10g02871 587 Gene3D Phosphorylase Kinase; domain 1 264 372 - -
Seca10g02871 587 FunFam probable receptor-like protein kinase At5g59700 373 583 - -
Seca10g02871 587 Pfam SPARK 44 171 IPR043891 -
Seca10g02871 587 SUPERFAMILY Protein kinase-like (PK-like) 285 563 IPR011009 -
Seca10g02871 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02871 Seca-Chr10 37822975 37826245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02871 266 570 Receptor kinase-like Gene Family AT2G28970 39.809 2.10e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Seca10g02871 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02871 - - aprc:113867593 854.744